myRT

myRT report for GCA_900890425.1_Kiritimatiellales_strain_F1_draft_genome

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Seq: CAAHFG010000001.1 (4373953 bp)
Overview 1 RT 1: 1145188-1151948 bp 2 RT 2: 2247118-2251967 bp 3 RT 3: 2365888-2372787 bp 4 RT 4: 4118891-4123641 bp Neighborhood of RT #1 [1145188, 1151998] SGSH Alpha_L_fucos RVT-GII GIIM ARS_like Neighborhood of RT #2 [2247118, 2251967] ugpC RVT-GII RVT-GII Neighborhood of RT #3 [2365888, 2372879] GALNS_like Lipase_GDSL_2 SGSH RVT-GII sulfatase_like Neighborhood of RT #4 [4118891, 4125500] DUF4372 DDE_Tnp_1 HEAT HEAT_2 RVT-GII GIIM COG2810 COG2810 Feature: gene Location: 1145188-1146666 bp Feature: domain Description: SGSH Location: 1145257-1146541 bp Feature: domain Description: SGSH Location: 1 1 45257-1 1 46541 bp Feature: gene Location: 1146702-1148363 bp Feature: domain Description: Alpha_L_fucos Location: 1147374-1148334 bp Feature: domain Description: Alpha_L_fucos Location: 1 1 47374-1 1 48334 bp Feature: gene Location: 1148668-1149993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1148926-1149541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 48926-1 1 49541 bp Feature: domain Description: GIIM Note: maturase Location: 1149586-1149814 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 49586-1 1 4981 4 bp Feature: gene Location: 1149937-1150344 bp Feature: gene Location: 1150508-1151998 bp Feature: domain Description: ARS_like Location: 1150667-1151948 bp Feature: domain Description: ARS_like Location: 1 1 50667-1 1 51 948 bp Feature: gene Location: 2247118-2248215 bp Feature: domain Description: ugpC Location: 2247121-2248192 bp Feature: domain Description: ugpC Location: 22471 21 -22481 92 bp Feature: gene Location: 2248319-2248504 bp Feature: gene Location: 2248662-2249279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2248686-2248902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2248686-2248902 bp Feature: gene Location: 2249292-2249987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2249550-2249982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2249550-2249982 bp Feature: gene Location: 2249910-2250398 bp Feature: gene Location: 2251083-2251967 bp Feature: gene Location: 2365888-2367354 bp Feature: domain Description: GALNS_like Location: 2366011-2367259 bp Feature: domain Description: GALNS_like Location: 236601 1 -2367259 bp Feature: gene Location: 2367351-2369447 bp Feature: domain Description: Lipase_GDSL_2 Location: 2367507-2368038 bp Feature: domain Description: Lipase_GDSL_2 Location: 2367507-2368038 bp Feature: domain Description: SGSH Location: 2368122-2369394 bp Feature: domain Description: SGSH Location: 23681 22-2369394 bp Feature: gene Location: 2369557-2370825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2369761-2370448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2369761 -2370448 bp Feature: gene Location: 2370844-2371227 bp Feature: gene Location: 2371422-2372879 bp Feature: domain Description: sulfatase_like Location: 2371497-2372787 bp Feature: domain Description: sulfatase_like Location: 2371 497-2372787 bp Feature: gene Location: 4118891-4120132 bp Feature: domain Description: DUF4372 Location: 4118936-4119131 bp Feature: domain Description: DUF4372 Location: 41 1 8936-41 1 91 31 bp Feature: domain Description: DDE_Tnp_1 Location: 4119308-4119950 bp Feature: domain Description: DDE_Tnp_1 Location: 41 1 9308-41 1 9950 bp Feature: gene Location: 4120302-4121141 bp Feature: domain Description: HEAT Location: 4120467-4120602 bp Feature: domain Description: HEAT Location: 41 20467-41 20602 bp Feature: domain Description: HEAT_2 Location: 4120668-4120776 bp Feature: domain Description: HEAT_2 Location: 41 20668-41 20776 bp Feature: gene Location: 4121227-4122552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4121485-4122103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 21 485-41 221 03 bp Feature: domain Description: GIIM Note: maturase Location: 4122145-4122373 bp Feature: domain Description: GIIM Note: maturase Location: 41 221 45-41 22373 bp Feature: gene Location: 4122496-4122903 bp Feature: gene Location: 4122990-4125500 bp Feature: domain Description: COG2810 Location: 4123176-4123347 bp Feature: domain Description: COG281 0 Location: 41 231 76-41 23347 bp Feature: domain Description: COG2810 Location: 4123419-4123641 bp Feature: domain Description: COG281 0 Location: 41 2341 9-41 23641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SGSH (cd16027), Alpha_L_fucos (smart00812), RVT-GII, GIIM (pfam08388), ARS_like (cd16146), ugpC (PRK11650), GALNS_like (cd16026), Lipase_GDSL_2 (pfam13472), sulfatase_like (cd16156), DUF4372 (pfam14294)
DDE_Tnp_1 (pfam01609), HEAT (sd00044), HEAT_2 (pfam13646), COG2810 (Predicted type IV restriction endonuclease )

Seq: CAAHFG010000004.1 (1171719 bp)
Overview 1 RT 1: 22650-29910 bp Neighborhood of RT #1 [22650, 29936] COG4584 COG3177 RVT-GII RVT-GII AbiEii AbiEi_3_N AbiEi_3 Feature: gene Location: 22650-24152 bp Feature: domain Description: COG4584 Location: 22719-23463 bp Feature: domain Description: COG4584 Location: 2 2 719-2 3463 bp Feature: gene Location: 24643-25815 bp Feature: domain Description: COG3177 Location: 24715-25771 bp Feature: domain Description: COG3177 Location: 2 4715-2 5771 bp Feature: gene Location: 26197-26814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26221-26437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 2 1-2 6437 bp Feature: gene Location: 26827-27522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27085-27517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7085-2 7517 bp Feature: gene Location: 28250-29161 bp Feature: domain Description: AbiEii Location: 28289-29027 bp Feature: domain Description: AbiEii Location: 2 82 89-2 902 7 bp Feature: gene Location: 29154-29936 bp Feature: domain Description: AbiEi_3_N Location: 29175-29445 bp Feature: domain Description: AbiEi_3_N Location: 2 9175-2 9445 bp Feature: domain Description: AbiEi_3 Location: 29457-29910 bp Feature: domain Description: AbiEi_3 Location: 2 9457-2 9910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), COG3177 (Fic family protein ), RVT-GII, AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459)

Seq: CAAHFG010000003.1 (1280676 bp)
Overview 1 RT 1: 812576-815741 bp Neighborhood of RT #1 [812576, 815741] KilA-N RVT-UG7 Bro-N Feature: gene Location: 812576-812983 bp Feature: gene Location: 812769-813335 bp Feature: domain Description: KilA-N Location: 812970-813159 bp Feature: domain Description: KilA-N Location: 812970-813 159 bp Feature: gene Location: 813337-814884 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 813709-814129 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 813 709-814129 bp Feature: gene Location: 815224-815421 bp Feature: domain Description: Bro-N Location: 815269-815377 bp Feature: domain Description: Bro-N Location: 815269-8153 77 bp Feature: gene Location: 815538-815741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KilA-N (pfam04383), RVT-UG7, Bro-N (smart01040)