myRT

myRT report for GCA_901456225.1_30_P_CF_hybrid_assembly

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Seq: CABDWZ010000002.1 (390161 bp)
Overview 1 RT 1: 379342-381660 bp Neighborhood of RT #1 [379342, 381660] RVT-GII PinE Feature: gene Location: 379342-379653 bp Feature: gene Location: 379659-379838 bp Feature: gene Location: 379978-380532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380002-380497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380002-380497 bp Feature: gene Location: 380540-381094 bp Feature: domain Description: PinE Location: 380543-381083 bp Feature: domain Description: PinE Location: 380543-381 083 bp Feature: gene Location: 381124-381660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PinE (COG1961)

Seq: CABDWZ010000001.1 (4745085 bp)
Overview 1 RT 1: 1357652-1361735 bp 2 RT 2: 1589641-1594135 bp 3 RT 3: 4734692-4738451 bp Neighborhood of RT #1 [1357652, 1361800] COG3547 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [1589641, 1594167] COG3547 RVT-GII GIIM UvrA Neighborhood of RT #3 [4734692, 4738459] HTH_38 Tra8 RVT-GII GIIM HTH_Tnp_Mu_1 SfsB Feature: gene Location: 1357652-1358734 bp Feature: domain Description: COG3547 Location: 1357697-1358660 bp Feature: domain Description: COG3547 Location: 1357697-1358660 bp Feature: gene Location: 1358940-1359152 bp Feature: domain Description: PHA02517 Location: 1358943-1359099 bp Feature: domain Description: PHA02 517 Location: 1358943-1359099 bp Feature: gene Location: 1359275-1360798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359548-1360280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359548-13602 80 bp Feature: domain Description: GIIM Note: maturase Location: 1360355-1360553 bp Feature: domain Description: GIIM Note: maturase Location: 1360355-1360553 bp Feature: gene Location: 1360752-1361177 bp Feature: gene Location: 1361390-1361800 bp Feature: domain Description: PHA02517 Location: 1361396-1361735 bp Feature: domain Description: PHA02 517 Location: 1361396-1361735 bp Feature: gene Location: 1589641-1590711 bp Feature: domain Description: COG3547 Location: 1589677-1590580 bp Feature: domain Description: COG3547 Location: 1589677-1590580 bp Feature: gene Location: 1590771-1590920 bp Feature: gene Location: 1591276-1592799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1591549-1592281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1591549-1592 2 81 bp Feature: domain Description: GIIM Note: maturase Location: 1592356-1592554 bp Feature: domain Description: GIIM Note: maturase Location: 1592 356-1592 554 bp Feature: gene Location: 1593093-1593722 bp Feature: gene Location: 1593742-1594167 bp Feature: domain Description: UvrA Location: 1593793-1594135 bp Feature: domain Description: UvrA Location: 1593793-1594135 bp Feature: gene Location: 4734692-4735843 bp Feature: domain Description: HTH_38 Location: 4734701-4734815 bp Feature: domain Description: HTH_38 Location: 4734701-4734815 bp Feature: domain Description: Tra8 Location: 4734851-4735832 bp Feature: domain Description: Tra8 Location: 4734851-4735832 bp Feature: gene Location: 4736159-4736338 bp Feature: gene Location: 4736451-4737278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4736676-4736760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4736676-4736760 bp Feature: domain Description: GIIM Note: maturase Location: 4736835-4737054 bp Feature: domain Description: GIIM Note: maturase Location: 4736835-4737054 bp Feature: gene Location: 4737516-4738007 bp Feature: domain Description: HTH_Tnp_Mu_1 Location: 4737558-4737900 bp Feature: domain Description: HTH_Tnp_Mu_1 Location: 4737558-4737900 bp Feature: gene Location: 4738205-4738459 bp Feature: domain Description: SfsB Location: 4738244-4738451 bp Feature: domain Description: SfsB Location: 47382 44-4738451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), UvrA (COG0178), HTH_38 (pfam13936), Tra8 (COG2826), HTH_Tnp_Mu_1 (pfam02316), SfsB (COG3423)