myRT

myRT report for GCA_901457815.1_ASM90145781v1

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Seq: CABDXN010000002.1 (203926 bp)
Overview 1 RT 1: 115710-122021 bp 2 RT 2: 167441-173637 bp Neighborhood of RT #1 [115710, 122044] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM HNHc TnpB_IS66 Neighborhood of RT #2 [167441, 173642] AAA_15 AAA_15 RVT-Retrons HMA PRK14727 Feature: gene Location: 115710-116234 bp Feature: domain Description: DDE_Tnp_IS66 Location: 115743-116088 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 1 5743-1 1 6088 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 116109-116211 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 61 09-1 1 621 1 bp Feature: gene Location: 116525-116671 bp Feature: gene Location: 116770-118164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117130-117814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 71 30-1 1 781 4 bp Feature: gene Location: 118169-119230 bp Feature: domain Description: LZ_Tnp_IS66 Location: 118268-118463 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 1 8268-1 1 8463 bp Feature: domain Description: zf-IS66 Location: 118490-118619 bp Feature: domain Description: zf-IS66 Location: 1 1 8490-1 1 861 9 bp Feature: domain Description: DDE_Tnp_IS66 Location: 118688-119120 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 1 8688-1 1 91 20 bp Feature: gene Location: 119494-121179 bp Feature: domain Description: RVT_N Location: 119551-119794 bp Feature: domain Description: RVT_N Location: 1 1 9551 -1 1 9794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119839-120496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9839-1 20496 bp Feature: domain Description: GIIM Note: maturase Location: 120556-120781 bp Feature: domain Description: GIIM Note: maturase Location: 1 20556-1 20781 bp Feature: domain Description: HNHc Note: nucleases Location: 120982-121129 bp Feature: domain Description: HNHc Note: nucleases Location: 1 20982-1 21 1 29 bp Feature: gene Location: 121239-121403 bp Feature: gene Location: 121721-122044 bp Feature: domain Description: TnpB_IS66 Location: 121826-122021 bp Feature: domain Description: TnpB_IS66 Location: 1 21 826-1 22021 bp Feature: gene Location: 167441-168403 bp Feature: gene Location: 168690-170045 bp Feature: domain Description: AAA_15 Location: 168693-168924 bp Feature: domain Description: AAA_1 5 Location: 1 68693-1 68924 bp Feature: domain Description: AAA_15 Location: 169071-169434 bp Feature: domain Description: AAA_1 5 Location: 1 69071 -1 69434 bp Feature: gene Location: 170050-171195 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 170320-170887 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 70320-1 70887 bp Feature: gene Location: 171573-171701 bp Feature: gene Location: 172002-173642 bp Feature: domain Description: HMA Location: 172014-172194 bp Feature: domain Description: HMA Location: 1 7201 4-1 721 94 bp Feature: domain Description: PRK14727 Location: 172221-173637 bp Feature: domain Description: PRK1 4727 Location: 1 72221 -1 73637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), TnpB_IS66 (pfam05717), AAA_15 (pfam13175)
RVT-Retrons, HMA (pfam00403), PRK14727 (putative mercuric reductase; Provisional)

Seq: CABDXN010000001.1 (4712952 bp)
Overview 1 RT 1: 394005-398525 bp 2 RT 2: 439302-445472 bp 3 RT 3: 538150-544996 bp 4 RT 4: 611824-615031 bp 5 RT 5: 973630-979057 bp 6 RT 6: 1420928-1425693 bp 7 RT 7: 1458557-1462466 bp 8 RT 8: 3340290-3345436 bp Neighborhood of RT #1 [394005, 398527] RVT-GII GIIM PRK13357 gpmA Neighborhood of RT #2 [439302, 445507] marine_trans_1 RVT-GII GIIM Ggt Dyp_perox Neighborhood of RT #3 [538150, 545268] ligand_gated_channel RVT-GII GIIM DUF4442 Nterm_IS4 DDE_Tnp_1 Neighborhood of RT #4 [611824, 615031] RVT-GII GIIM Neighborhood of RT #5 [973630, 979098] KOG1047 RVT-GII GIIM AhpC-TSA PRK11568 Neighborhood of RT #6 [1420928, 1425693] fadJ RVT-GII GIIM Neighborhood of RT #7 [1458557, 1462585] rplS RVT-GII GIIM YadS crotonase-like Neighborhood of RT #8 [3340290, 3345436] PRK14975 RVT-UG9 TonB_C Feature: gene Location: 394005-394232 bp Feature: gene Location: 394376-394597 bp Feature: gene Location: 394645-396033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394975-395593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394975-395593 bp Feature: domain Description: GIIM Note: maturase Location: 395641-395872 bp Feature: domain Description: GIIM Note: maturase Location: 395641-395872 bp Feature: gene Location: 396713-397714 bp Feature: domain Description: PRK13357 Location: 396722-397706 bp Feature: domain Description: PRK13357 Location: 39672 2 -397706 bp Feature: gene Location: 397781-398527 bp Feature: domain Description: gpmA Location: 397787-398525 bp Feature: domain Description: gpmA Location: 397787-39852 5 bp Feature: gene Location: 439302-440549 bp Feature: domain Description: marine_trans_1 Location: 439329-440532 bp Feature: domain Description: marine_trans_1 Location: 43932 9-440532 bp Feature: gene Location: 440836-440979 bp Feature: gene Location: 441106-442494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441436-442054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441436-442 054 bp Feature: domain Description: GIIM Note: maturase Location: 442102-442333 bp Feature: domain Description: GIIM Note: maturase Location: 442 102 -442 333 bp Feature: gene Location: 442706-444397 bp Feature: domain Description: Ggt Location: 442808-444395 bp Feature: domain Description: Ggt Location: 442 808-444395 bp Feature: gene Location: 444581-445507 bp Feature: domain Description: Dyp_perox Location: 444692-445472 bp Feature: domain Description: Dyp_perox Location: 444692 -445472 bp Feature: gene Location: 538150-541236 bp Feature: domain Description: ligand_gated_channel Location: 538342-541231 bp Feature: domain Description: ligand_gated_channel Location: 538342 -5412 31 bp Feature: gene Location: 541485-541625 bp Feature: gene Location: 541752-543140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542082-542700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542 082 -542 700 bp Feature: domain Description: GIIM Note: maturase Location: 542748-542979 bp Feature: domain Description: GIIM Note: maturase Location: 542 748-542 979 bp Feature: gene Location: 543351-543812 bp Feature: domain Description: DUF4442 Location: 543408-543798 bp Feature: domain Description: DUF4442 Location: 543408-543798 bp Feature: gene Location: 543940-545268 bp Feature: domain Description: Nterm_IS4 Location: 543997-544267 bp Feature: domain Description: Nterm_IS4 Location: 543997-5442 67 bp Feature: domain Description: DDE_Tnp_1 Location: 544324-544996 bp Feature: domain Description: DDE_Tnp_1 Location: 54432 4-544996 bp Feature: gene Location: 611824-612135 bp Feature: gene Location: 612435-612815 bp Feature: gene Location: 612797-614146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613076-613709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613076-613709 bp Feature: domain Description: GIIM Note: maturase Location: 613751-613979 bp Feature: domain Description: GIIM Note: maturase Location: 613751-613979 bp Feature: gene Location: 614215-614703 bp Feature: gene Location: 614765-615031 bp Feature: gene Location: 973630-975576 bp Feature: domain Description: KOG1047 Location: 973819-975553 bp Feature: domain Description: KOG1047 Location: 973819-975553 bp Feature: gene Location: 975917-976069 bp Feature: gene Location: 976185-977573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976515-977133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976515-977133 bp Feature: domain Description: GIIM Note: maturase Location: 977181-977412 bp Feature: domain Description: GIIM Note: maturase Location: 977181-977412 bp Feature: gene Location: 977830-978366 bp Feature: domain Description: AhpC-TSA Location: 977863-978244 bp Feature: domain Description: AhpC-TSA Location: 977863-9782 44 bp Feature: gene Location: 978490-979098 bp Feature: domain Description: PRK11568 Location: 978496-979057 bp Feature: domain Description: PRK11568 Location: 978496-979057 bp Feature: gene Location: 1420928-1423087 bp Feature: domain Description: fadJ Location: 1420973-1423085 bp Feature: domain Description: fadJ Location: 142 0973-142 3085 bp Feature: gene Location: 1423333-1423485 bp Feature: gene Location: 1423601-1424989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1423931-1424549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 3931-142 4549 bp Feature: domain Description: GIIM Note: maturase Location: 1424597-1424828 bp Feature: domain Description: GIIM Note: maturase Location: 142 4597-142 482 8 bp Feature: gene Location: 1425228-1425425 bp Feature: gene Location: 1425526-1425693 bp Feature: gene Location: 1458557-1458919 bp Feature: domain Description: rplS Location: 1458581-1458914 bp Feature: domain Description: rplS Location: 1458581-1458914 bp Feature: gene Location: 1459282-1459479 bp Feature: gene Location: 1459720-1460991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1459933-1460554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1459933-1460554 bp Feature: domain Description: GIIM Note: maturase Location: 1460599-1460821 bp Feature: domain Description: GIIM Note: maturase Location: 1460599-146082 1 bp Feature: gene Location: 1461142-1461771 bp Feature: domain Description: YadS Location: 1461163-1461751 bp Feature: domain Description: YadS Location: 1461163-1461751 bp Feature: gene Location: 1461869-1462585 bp Feature: domain Description: crotonase-like Location: 1461890-1462466 bp Feature: domain Description: crotonase-like Location: 1461890-1462 466 bp Feature: gene Location: 3340290-3340487 bp Feature: gene Location: 3340718-3342268 bp Feature: domain Description: PRK14975 Location: 3341111-3342215 bp Feature: domain Description: PRK14975 Location: 3341111-3342 2 15 bp Feature: gene Location: 3342261-3343901 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3342471-3343104 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3342 471-3343104 bp Feature: gene Location: 3344368-3345219 bp Feature: domain Description: TonB_C Location: 3344980-3345154 bp Feature: domain Description: TonB_C Location: 3344980-3345154 bp Feature: gene Location: 3345302-3345436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK13357 (branched-chain amino acid aminotransferase; Provisional), gpmA (PRK14120), marine_trans_1 (TIGR03644), Ggt (COG0405), Dyp_perox (pfam04261), ligand_gated_channel (cd01347), DUF4442 (pfam14539), Nterm_IS4 (pfam13006)
DDE_Tnp_1 (pfam01609), KOG1047 (KOG1047, Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H ), AhpC-TSA (pfam00578), PRK11568 (IMPACT family protein), fadJ (PRK11154), rplS (PRK05338), YadS (COG2860), crotonase-like (cl23717), PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9
TonB_C (pfam03544)