myRT

myRT report for GCA_901457835.1_ASM90145783v1

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Seq: CABDXM010000001.1 (4634081 bp)
Overview 1 RT 1: 610414-617361 bp 2 RT 2: 2500996-2504046 bp 3 RT 3: 3600795-3604724 bp 4 RT 4: 4579554-4589463 bp Neighborhood of RT #1 [610414, 617369] COG3904 RVT-GII GIIM RVT-GII GIIM integrase_gron Neighborhood of RT #2 [2500996, 2504046] DUF4878 RVT-GII GIIM Neighborhood of RT #3 [3600795, 3604741] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #4 [4579554, 4589639] DUF45 COG0610 RVT-UG5 YjgR SIR2_2 Feature: gene Location: 610414-611136 bp Feature: domain Description: COG3904 Location: 610528-610855 bp Feature: domain Description: COG3904 Location: 61 0528-61 0855 bp Feature: gene Location: 611552-611752 bp Feature: gene Location: 611763-613112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612042-612675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 2042-61 2675 bp Feature: domain Description: GIIM Note: maturase Location: 612717-612945 bp Feature: domain Description: GIIM Note: maturase Location: 61 271 7-61 2945 bp Feature: gene Location: 613187-613795 bp Feature: gene Location: 614087-614467 bp Feature: gene Location: 614449-615798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 614728-615361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 4728-61 5361 bp Feature: domain Description: GIIM Note: maturase Location: 615403-615631 bp Feature: domain Description: GIIM Note: maturase Location: 61 5403-61 5631 bp Feature: gene Location: 615956-616144 bp Feature: gene Location: 616401-617369 bp Feature: domain Description: integrase_gron Location: 616416-617361 bp Feature: domain Description: integrase_gron Location: 61 641 6-61 7361 bp Feature: gene Location: 2500996-2501454 bp Feature: domain Description: DUF4878 Location: 2501104-2501428 bp Feature: domain Description: DUF4878 Location: 2501 1 04-2501 428 bp Feature: gene Location: 2501719-2501958 bp Feature: gene Location: 2502061-2503410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2502340-2502973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2502340-2502973 bp Feature: domain Description: GIIM Note: maturase Location: 2503015-2503243 bp Feature: domain Description: GIIM Note: maturase Location: 250301 5-2503243 bp Feature: gene Location: 2503392-2503772 bp Feature: gene Location: 2503888-2504046 bp Feature: gene Location: 3600795-3601145 bp Feature: domain Description: TnpB_IS66 Location: 3600822-3601104 bp Feature: domain Description: TnpB_IS66 Location: 3600822-3601 1 04 bp Feature: gene Location: 3601232-3602275 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3601313-3601505 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3601 31 3-3601 505 bp Feature: domain Description: zf-IS66 Location: 3601529-3601661 bp Feature: domain Description: zf-IS66 Location: 3601 529-3601 661 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3601721-3602162 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3601 721 -36021 62 bp Feature: gene Location: 3602280-3603674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3602640-3603324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3602640-3603324 bp Feature: gene Location: 3603713-3603919 bp Feature: gene Location: 3604217-3604741 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3604244-3604595 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3604244-3604595 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3604616-3604724 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 360461 6-3604724 bp Feature: gene Location: 4579554-4580303 bp Feature: domain Description: DUF45 Location: 4579662-4580277 bp Feature: domain Description: DUF45 Location: 4579662-4580277 bp Feature: gene Location: 4580318-4583599 bp Feature: domain Description: COG0610 Location: 4580345-4583438 bp Feature: domain Description: COG061 0 Location: 4580345-4583438 bp Feature: gene Location: 4583643-4586585 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4584132-4584588 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 45841 32-4584588 bp Feature: gene Location: 4586813-4588552 bp Feature: domain Description: YjgR Location: 4587263-4588484 bp Feature: domain Description: YjgR Location: 4587263-4588484 bp Feature: gene Location: 4588554-4589639 bp Feature: domain Description: SIR2_2 Location: 4588968-4589463 bp Feature: domain Description: SIR2_2 Location: 4588968-4589463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3904 (Predicted periplasmic protein ), RVT-GII, GIIM (pfam08388), integrase_gron (TIGR02249), DUF4878 (pfam12870), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)
DUF45 (pfam01863), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG5, YjgR (COG0433), SIR2_2 (pfam13289)