myRT

myRT report for GCA_901482655.1_28771_D01

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Seq: CABEEZ010000067.1 (54823 bp)
Overview 1 RT 1: 16500-19247 bp Neighborhood of RT #1 [16500, 19258] rep_term_tus RVT-GII RVT-GII PRK00702 Feature: gene Location: 16500-16637 bp Feature: domain Description: rep_term_tus Location: 16506-16626 bp Feature: domain Description: rep_term_tus Location: 1 6506-1 6626 bp Feature: gene Location: 16657-17046 bp Feature: gene Location: 17186-17386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17192-17342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 92-1 7342 bp Feature: gene Location: 17364-17981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17556-17952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7556-1 7952 bp Feature: gene Location: 18136-18381 bp Feature: gene Location: 18599-19258 bp Feature: domain Description: PRK00702 Location: 18602-19247 bp Feature: domain Description: PRK00702 Location: 1 8602-1 9247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rep_term_tus (TIGR02648), RVT-GII, PRK00702 (ribose-5-phosphate isomerase RpiA)

Seq: CABEEZ010000140.1 (34613 bp)
Overview 1 RT 1: 2497-5858 bp Neighborhood of RT #1 [2497, 5878] rep_term_tus RVT-GII RVT-GII EhpR_like YafY Feature: gene Location: 2497-2826 bp Feature: domain Description: rep_term_tus Location: 2500-2809 bp Feature: domain Description: rep_term_tus Location: 2 500-2 809 bp Feature: gene Location: 2994-3302 bp Feature: gene Location: 3442-3642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3448-3625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3448-362 5 bp Feature: gene Location: 3760-4365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4081-4324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4081-432 4 bp Feature: gene Location: 4837-5208 bp Feature: domain Description: EhpR_like Location: 4858-5191 bp Feature: domain Description: EhpR_like Location: 4858-5191 bp Feature: gene Location: 5291-5878 bp Feature: domain Description: YafY Location: 5297-5858 bp Feature: domain Description: YafY Location: 52 97-5858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rep_term_tus (TIGR02648), RVT-GII, EhpR_like (cd07261), YafY (COG2378)

Seq: CABEEZ010000039.1 (45961 bp)
Overview 1 RT 1: 19857-22862 bp Neighborhood of RT #1 [19857, 22862] COG3440 RVT-GII GIIM Feature: gene Location: 19857-20132 bp Feature: gene Location: 20295-21059 bp Feature: domain Description: COG3440 Location: 20505-20991 bp Feature: domain Description: COG3 440 Location: 20505-20991 bp Feature: gene Location: 21159-22199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21168-21786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21168-21786 bp Feature: domain Description: GIIM Note: maturase Location: 21834-22065 bp Feature: domain Description: GIIM Note: maturase Location: 2183 4-22065 bp Feature: gene Location: 22240-22398 bp Feature: gene Location: 22641-22862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3440 (Predicted restriction endonuclease ), RVT-GII, GIIM (pfam08388)

Seq: CABEEZ010000110.1 (39408 bp)
Overview 1 RT 1: 246-1816 bp Neighborhood of RT #1 [246, 1824] RVT-GII Dps Feature: gene Location: 246-725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 567-705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 567-705 bp Feature: gene Location: 751-996 bp Feature: gene Location: 1444-1824 bp Feature: domain Description: Dps Location: 1447-1816 bp Feature: domain Description: Dps Location: 14 4 7-1816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Dps (COG0783)

Seq: CABEEZ010000096.1 (199517 bp)
Overview 1 RT 1: 185488-193457 bp Neighborhood of RT #1 [185488, 193457] FimD FimD RVT-UG4 Feature: gene Location: 185488-186507 bp Feature: domain Description: FimD Location: 185572-186409 bp Feature: domain Description: FimD Location: 185 5 72-186409 bp Feature: gene Location: 186635-188116 bp Feature: domain Description: FimD Location: 186641-188048 bp Feature: domain Description: FimD Location: 186641-188048 bp Feature: gene Location: 188180-190273 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 188654-189092 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 18865 4-189092 bp Feature: gene Location: 191630-192223 bp Feature: gene Location: 193299-193457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimD (COG3188), RVT-UG4

Seq: CABEEZ010000125.1 (81233 bp)
Overview 1 RT 1: 1086-3508 bp Neighborhood of RT #1 [1086, 3510] RVT-UG4 FimA Feature: gene Location: 1086-1283 bp Feature: gene Location: 1403-1834 bp Feature: gene Location: 2093-2467 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2153-2444 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2153-2444 bp Feature: gene Location: 2505-2663 bp Feature: gene Location: 2944-3510 bp Feature: domain Description: FimA Location: 3004-3508 bp Feature: domain Description: FimA Location: 3004-3508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, FimA (pfam16970)

Seq: CABEEZ010000021.1 (120900 bp)
Overview 1 RT 1: 51530-53684 bp Neighborhood of RT #1 [51530, 53684] PRK15260 RVT-UG4 Feature: gene Location: 51530-51802 bp Feature: domain Description: PRK15260 Location: 51536-51797 bp Feature: domain Description: PRK15260 Location: 51536-517 97 bp Feature: gene Location: 51820-52056 bp Feature: gene Location: 52112-52537 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 52178-52493 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5217 8-52493 bp Feature: gene Location: 52850-53152 bp Feature: gene Location: 53160-53684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15260 (fimbrial protein SteF; Provisional), RVT-UG4