myRT

myRT report for GCA_901556995.1_SB4934_W14T_Ko1

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Seq: CABEJB010000025.1 (118682 bp)
Overview 1 RT 1: 115893-118611 bp Neighborhood of RT #1 [115893, 118611] RVT-GII Feature: gene Location: 115893-116048 bp Feature: gene Location: 116376-116606 bp Feature: gene Location: 116840-118327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117245-117935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 7245-1 1 7935 bp Feature: gene Location: 118378-118611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CABEJB010000012.1 (749708 bp)
Overview 1 RT 1: 598733-603794 bp Neighborhood of RT #1 [598733, 603835] YccC PRK10016 RVT-GII Caps_assemb_Wzi Feature: gene Location: 598733-599791 bp Feature: domain Description: YccC Location: 598739-599777 bp Feature: domain Description: YccC Location: 598739-599777 bp Feature: gene Location: 599890-600363 bp Feature: domain Description: PRK10016 Location: 599893-600352 bp Feature: domain Description: PRK10016 Location: 599893-600352 bp Feature: gene Location: 600445-601932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 600850-601540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 600850-601540 bp Feature: gene Location: 601983-602216 bp Feature: gene Location: 602399-603835 bp Feature: domain Description: Caps_assemb_Wzi Location: 602669-603794 bp Feature: domain Description: Caps_assemb_Wzi Location: 602 669-603794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, Caps_assemb_Wzi (pfam14052)

Seq: CABEJB010000001.1 (1476486 bp)
Overview 1 RT 1: 190755-195267 bp 2 RT 2: 1416427-1423770 bp Neighborhood of RT #1 [190755, 195267] PRK08178 PRK08155 RVT-GII Neighborhood of RT #2 [1416427, 1423775] TrxB AcrR RVT-UG15 proA proB Feature: gene Location: 190755-191045 bp Feature: domain Description: PRK08178 Location: 190758-191043 bp Feature: domain Description: PRK08178 Location: 190758-191043 bp Feature: gene Location: 191049-192737 bp Feature: domain Description: PRK08155 Location: 191052-192735 bp Feature: domain Description: PRK08155 Location: 191052-19273 5 bp Feature: gene Location: 193297-194781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193699-194389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 699-1943 89 bp Feature: gene Location: 194835-195068 bp Feature: gene Location: 194938-195267 bp Feature: gene Location: 1416427-1417320 bp Feature: domain Description: TrxB Location: 1416433-1417309 bp Feature: domain Description: TrxB Location: 141643 3 -14173 09 bp Feature: gene Location: 1417440-1418099 bp Feature: domain Description: AcrR Location: 1417476-1418064 bp Feature: domain Description: AcrR Location: 1417476-1418064 bp Feature: gene Location: 1419043-1420335 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1419130-1419550 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 141913 0-1419550 bp Feature: gene Location: 1421408-1422661 bp Feature: domain Description: proA Location: 1421435-1422626 bp Feature: domain Description: proA Location: 142143 5-1422626 bp Feature: gene Location: 1422672-1423775 bp Feature: domain Description: proB Location: 1422687-1423770 bp Feature: domain Description: proB Location: 1422687-1423 770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08178 (acetolactate synthase 1 small subunit), PRK08155 (acetolactate synthase large subunit), RVT-GII, TrxB (COG0492), AcrR (COG1309), RVT-UG15, proA (TIGR00407), proB (TIGR01027)

Seq: CABEJB010000028.1 (140224 bp)
Overview 1 RT 1: 99191-103008 bp Neighborhood of RT #1 [99191, 103124] RVT-Retrons PHA02517 COG3547 Feature: gene Location: 99191-99670 bp Feature: gene Location: 99730-99876 bp Feature: gene Location: 100093-100911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100129-100654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100129-100654 bp Feature: gene Location: 101753-101965 bp Feature: domain Description: PHA02517 Location: 101756-101957 bp Feature: domain Description: PHA02517 Location: 101756-101957 bp Feature: gene Location: 102048-103124 bp Feature: domain Description: COG3547 Location: 102087-103008 bp Feature: domain Description: COG354 7 Location: 102087-103008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase )

Seq: CABEJB010000005.1 (206849 bp)
Overview 1 RT 1: 171266-176082 bp 2 RT 2: 198903-202924 bp Neighborhood of RT #1 [171266, 176082] Phage_GPA RVT-GII Neighborhood of RT #2 [198903, 202962] RVT-UG11 PRK04972 YbjM Feature: gene Location: 171266-173647 bp Feature: domain Description: Phage_GPA Location: 171830-172793 bp Feature: domain Description: Phage_GPA Location: 171830-172793 bp Feature: gene Location: 173825-174058 bp Feature: gene Location: 174109-175596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174514-175204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1745 14-175 204 bp Feature: gene Location: 175672-175857 bp Feature: gene Location: 175870-176082 bp Feature: gene Location: 198903-199106 bp Feature: gene Location: 199445-199624 bp Feature: gene Location: 199587-200360 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 199722-200175 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 199722-200175 bp Feature: gene Location: 200626-202311 bp Feature: domain Description: PRK04972 Location: 200629-202300 bp Feature: domain Description: PRK04972 Location: 200629-202300 bp Feature: gene Location: 202579-202962 bp Feature: domain Description: YbjM Location: 202591-202924 bp Feature: domain Description: YbjM Location: 2025 91-202924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, RVT-UG11, PRK04972 (putative transporter; Provisional), YbjM (pfam11045)

Seq: CABEJB010000008.1 (4394 bp)
Overview 1 RT 1: 2017-4392 bp Neighborhood of RT #1 [2017, 4391] umuC PRK10276 RVT-GII Feature: gene Location: 2017-2592 bp Feature: domain Description: umuC Location: 2020-2449 bp Feature: domain Description: umuC Location: 2020-2449 bp Feature: gene Location: 2592-3290 bp Feature: domain Description: PRK10276 Location: 2868-3276 bp Feature: domain Description: PRK10276 Location: 286 8-3276 bp Feature: gene Location: 3420-4391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3825-4392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3825-4392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: CABEJB010000026.1 (136210 bp)
Overview 1 RT 1: 46244-50326 bp Neighborhood of RT #1 [46244, 50463] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 46244-46675 bp Feature: domain Description: PRK10276 Location: 46295-46658 bp Feature: domain Description: PRK1027 6 Location: 46295-46658 bp Feature: gene Location: 46873-47085 bp Feature: gene Location: 47160-48569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47487-48177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47 487 -4817 7 bp Feature: gene Location: 48818-49789 bp Feature: domain Description: StbA Location: 48821-49766 bp Feature: domain Description: StbA Location: 48821-497 66 bp Feature: gene Location: 49792-50463 bp Feature: domain Description: Plasmid_stab_B Location: 49807-50014 bp Feature: domain Description: Plasmid_stab_B Location: 49807 -50014 bp Feature: domain Description: Plasmid_stab_B Location: 50119-50326 bp Feature: domain Description: Plasmid_stab_B Location: 50119-50326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)