myRT

myRT report for GCA_901669915.1_abaGIM_assembly

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Seq: CABFJG010000654.1 (3295 bp)
Overview 1 RT 1: 106-3295 bp Neighborhood of RT #1 [106, 3294] GIIM HNHc RVT_N RVT-GII YbaY Feature: gene Location: 106-837 bp Feature: domain Description: GIIM Note: maturase Location: 163-397 bp Feature: domain Description: GIIM Note: maturase Location: 1 63-397 bp Feature: domain Description: HNHc Note: nucleases Location: 610-781 bp Feature: domain Description: HNHc Note: nucleases Location: 61 0-781 bp Feature: gene Location: 974-1810 bp Feature: domain Description: RVT_N Location: 1031-1274 bp Feature: domain Description: RVT_N Location: 1 031 -1 274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1319-1808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 9-1 808 bp Feature: gene Location: 2409-2795 bp Feature: gene Location: 2878-3294 bp Feature: domain Description: YbaY Location: 3034-3295 bp Feature: domain Description: YbaY Location: 3034-3295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), RVT-GII, YbaY (COG3126)

Seq: CABFJG010000699.1 (3263 bp)
Overview 1 RT 1: 105-2805 bp Neighborhood of RT #1 [105, 2805] RVT_N RVT-GII YkfC HNH Feature: gene Location: 105-1817 bp Feature: domain Description: RVT_N Location: 162-405 bp Feature: domain Description: RVT_N Location: 162 -405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-1086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-1086 bp Feature: domain Description: YkfC Location: 1296-1446 bp Feature: domain Description: YkfC Location: 12 96-1446 bp Feature: domain Description: HNH Note: nucleases Location: 1623-1761 bp Feature: domain Description: HNH Note: nucleases Location: 162 3-1761 bp Feature: gene Location: 2240-2509 bp Feature: gene Location: 2659-2805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)

Seq: CABFJG010001053.1 (2298 bp)
Overview 1 RT 1: 87-2004 bp Neighborhood of RT #1 [87, 2004] RVT-UG5 Feature: gene Location: 87-1172 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 582-1053 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 582-1053 bp Feature: gene Location: 1169-1621 bp Feature: gene Location: 1726-2004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5

Seq: CABFJG010000088.1 (4554 bp)
Overview 1 RT 1: 3-4266 bp Neighborhood of RT #1 [3, 4415] EAL RVT_N RVT-GII GIIM HNH int Feature: gene Location: 3-911 bp Feature: domain Description: EAL Location: 84-549 bp Feature: domain Description: EAL Location: 84 -54 9 bp Feature: gene Location: 1697-3382 bp Feature: domain Description: RVT_N Location: 1754-1994 bp Feature: domain Description: RVT_N Location: 1754 -1994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2042-2678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204 2-2678 bp Feature: domain Description: GIIM Note: maturase Location: 2732-2963 bp Feature: domain Description: GIIM Note: maturase Location: 2732-2963 bp Feature: domain Description: HNH Note: nucleases Location: 3215-3353 bp Feature: domain Description: HNH Note: nucleases Location: 3215-3353 bp Feature: gene Location: 3513-4415 bp Feature: domain Description: int Location: 3522-4266 bp Feature: domain Description: int Location: 3522-4 266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EAL (smart00052), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), int (PHA02601)

Seq: CABFJG010001321.1 (9567 bp)
Overview 1 RT 1: 2462-5500 bp Neighborhood of RT #1 [2462, 5500] DUF772 RVT-GII GIIM Feature: gene Location: 2462-2935 bp Feature: domain Description: DUF772 Location: 2468-2639 bp Feature: domain Description: DUF772 Location: 2468-2639 bp Feature: gene Location: 3078-3647 bp Feature: gene Location: 3692-4555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3704-4193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3704-4193 bp Feature: domain Description: GIIM Note: maturase Location: 4271-4421 bp Feature: domain Description: GIIM Note: maturase Location: 4271-4421 bp Feature: gene Location: 4649-5137 bp Feature: gene Location: 5321-5500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)