myRT

myRT report for GCA_902143315.1_GOM9_contigs

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Seq: CABFUU010000224.1 (4313 bp)
Overview 1 RT 1: 3-2214 bp Neighborhood of RT #1 [3, 2214] RVT-GII GIIM HNHc Big_7 Feature: gene Location: 3-1361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-582 bp Feature: domain Description: GIIM Note: maturase Location: 690-909 bp Feature: domain Description: GIIM Note: maturase Location: 690-909 bp Feature: domain Description: HNHc Note: nucleases Location: 1119-1272 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 1 9-1 272 bp Feature: gene Location: 1470-1976 bp Feature: domain Description: Big_7 Location: 1524-1665 bp Feature: domain Description: Big_7 Location: 1 524-1 665 bp Feature: gene Location: 2059-2214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), Big_7 (pfam17957)

Seq: CABFUU010001038.1 (2066 bp)
Overview 1 RT 1: 231-1944 bp Neighborhood of RT #1 [231, 1991] RVT_N RVT-GII GIIM HNH Feature: gene Location: 231-1991 bp Feature: domain Description: RVT_N Location: 282-528 bp Feature: domain Description: RVT_N Location: 2 82 -52 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591-1242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591-12 42 bp Feature: domain Description: GIIM Note: maturase Location: 1362-1575 bp Feature: domain Description: GIIM Note: maturase Location: 1362 -1575 bp Feature: domain Description: HNH Note: nucleases Location: 1803-1944 bp Feature: domain Description: HNH Note: nucleases Location: 1803-1944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: CABFUU010000942.1 (2193 bp)
Overview 1 RT 1: 3-1777 bp Neighborhood of RT #1 [3, 1824] RVT-GII GIIM HNHc HicB Feature: gene Location: 3-866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-78 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-78 bp Feature: domain Description: GIIM Note: maturase Location: 189-405 bp Feature: domain Description: GIIM Note: maturase Location: 189-405 bp Feature: domain Description: HNHc Note: nucleases Location: 615-768 bp Feature: domain Description: HNHc Note: nucleases Location: 615-768 bp Feature: gene Location: 1090-1302 bp Feature: gene Location: 1606-1824 bp Feature: domain Description: HicB Location: 1618-1777 bp Feature: domain Description: HicB Location: 1618-1777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), HicB (pfam05534)

Seq: CABFUU010003320.1 (598 bp)
Overview 1 RT 1: 3-516 bp Neighborhood of RT #1 [3, 515] RVT_N RVT-GII Feature: gene Location: 3-515 bp Feature: domain Description: RVT_N Location: 72-318 bp Feature: domain Description: RVT_N Location: 72-318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381-516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381-516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: CABFUU010000386.1 (3445 bp)
Overview 1 RT 1: 3-2714 bp Neighborhood of RT #1 [3, 2714] RVT-GII GIIM HNHc PRK13557 BaeS Feature: gene Location: 3-866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-78 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-78 bp Feature: domain Description: GIIM Note: maturase Location: 189-405 bp Feature: domain Description: GIIM Note: maturase Location: 189-405 bp Feature: domain Description: HNHc Note: nucleases Location: 615-768 bp Feature: domain Description: HNHc Note: nucleases Location: 615 -768 bp Feature: gene Location: 1103-2155 bp Feature: domain Description: PRK13557 Location: 1121-1340 bp Feature: domain Description: PRK135 5 7 Location: 1121-1340 bp Feature: domain Description: BaeS Location: 1358-2126 bp Feature: domain Description: BaeS Location: 135 8-2126 bp Feature: gene Location: 2280-2714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13557 (histidine kinase; Provisional), BaeS (COG0642)

Seq: CABFUU010004211.1 (395 bp)
Overview 1 RT 1: 1-343 bp Neighborhood of RT #1 [1, 393] RVT-UG4 Feature: gene Location: 1-393 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7-343 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7-343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: CABFUU010004562.1 (342 bp)
Overview 1 RT 1: 2-317 bp Neighborhood of RT #1 [2, 340] RVT-GII Feature: gene Location: 2-340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47-317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47 -317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CABFUU010000749.1 (2516 bp)
Overview 1 RT 1: 87-2303 bp Neighborhood of RT #1 [87, 2365] RVT_N RVT-GII GIIM McrA Feature: gene Location: 87-251 bp Feature: gene Location: 275-508 bp Feature: gene Location: 554-2365 bp Feature: domain Description: RVT_N Location: 623-869 bp Feature: domain Description: RVT_N Location: 623-8 69 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932-1595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932-1595 bp Feature: domain Description: GIIM Note: maturase Location: 1706-1925 bp Feature: domain Description: GIIM Note: maturase Location: 1706-1925 bp Feature: domain Description: McrA Location: 2084-2303 bp Feature: domain Description: McrA Location: 208 4-2303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: CABFUU010001899.1 (1242 bp)
Overview 1 RT 1: 2-746 bp Neighborhood of RT #1 [2, 898] RVT-GII Feature: gene Location: 2-277 bp Feature: gene Location: 323-898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344-746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344-746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CABFUU010004731.1 (313 bp)
Overview 1 RT 1: 3-309 bp Neighborhood of RT #1 [3, 311] RVT-UG4 Feature: gene Location: 3-311 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 171-309 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 171-309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: CABFUU010001336.1 (1690 bp)
Overview 1 RT 1: 1-1681 bp Neighborhood of RT #1 [1, 1689] RVT-GII GIIM HNHc ROK_glcA_fam Feature: gene Location: 1-1302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37-424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37-424 bp Feature: domain Description: GIIM Note: maturase Location: 532-763 bp Feature: domain Description: GIIM Note: maturase Location: 532-763 bp Feature: domain Description: HNHc Note: nucleases Location: 958-1123 bp Feature: domain Description: HNHc Note: nucleases Location: 958-11 23 bp Feature: gene Location: 1561-1689 bp Feature: domain Description: ROK_glcA_fam Location: 1564-1681 bp Feature: domain Description: ROK_glcA_fam Location: 1564-1681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), ROK_glcA_fam (TIGR00744)