myRT

myRT report for GCA_902143525.1_P7770

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Seq: CABFVC010000002.1 (665645 bp)
Overview 1 RT 1: 159621-168344 bp 2 RT 2: 248503-253837 bp Neighborhood of RT #1 [159621, 168344] VirD4 RVT-GII VirD4 Maff2 RVT-GII HNHc Maff2 Neighborhood of RT #2 [248503, 253837] RVT-GII Intron_maturas2 HNHc TraC-F-type Feature: gene Location: 159621-160424 bp Feature: domain Description: VirD4 Location: 159891-160365 bp Feature: domain Description: VirD4 Location: 1 59891 -1 60365 bp Feature: gene Location: 160574-160894 bp Feature: gene Location: 161052-162923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161364-162105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 364-1 621 05 bp Feature: gene Location: 163020-164216 bp Feature: domain Description: VirD4 Location: 163083-164094 bp Feature: domain Description: VirD4 Location: 1 63083-1 64094 bp Feature: gene Location: 164465-164596 bp Feature: domain Description: Maff2 Location: 164468-164591 bp Feature: domain Description: Maff2 Location: 1 64468-1 64591 bp Feature: gene Location: 164606-164896 bp Feature: gene Location: 165311-167188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165638-166376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 65638-1 66376 bp Feature: domain Description: HNHc Note: nucleases Location: 166913-167075 bp Feature: domain Description: HNHc Note: nucleases Location: 1 6691 3-1 67075 bp Feature: gene Location: 167309-167443 bp Feature: domain Description: Maff2 Location: 167348-167438 bp Feature: domain Description: Maff2 Location: 1 67348-1 67438 bp Feature: gene Location: 167472-168344 bp Feature: gene Location: 248503-249453 bp Feature: gene Location: 249797-249988 bp Feature: gene Location: 250115-251911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250400-251198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250400-251 1 98 bp Feature: domain Description: Intron_maturas2 Location: 251285-251558 bp Feature: domain Description: Intron_maturas2 Location: 251 285-251 558 bp Feature: domain Description: HNHc Note: nucleases Location: 251738-251891 bp Feature: domain Description: HNHc Note: nucleases Location: 251 738-251 891 bp Feature: gene Location: 252060-253520 bp Feature: domain Description: TraC-F-type Location: 252102-253395 bp Feature: domain Description: TraC-F-type Location: 2521 02-253395 bp Feature: gene Location: 253517-253837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, Maff2 (pfam12750), HNHc (smart00507), Intron_maturas2 (pfam01348), TraC-F-type (TIGR02746)

Seq: CABFVC010000001.1 (835648 bp)
Overview 1 RT 1: 157226-160910 bp 2 RT 2: 339307-343393 bp Neighborhood of RT #1 [157226, 160939] RutF PucG RVT-GII Hit Neighborhood of RT #2 [339307, 343539] RHOD group_II_RT_mat RVT-GII tspaseT_teng_C Y1_Tnp Feature: gene Location: 157226-157843 bp Feature: domain Description: RutF Location: 157400-157838 bp Feature: domain Description: RutF Location: 157400-157838 bp Feature: gene Location: 158092-158547 bp Feature: domain Description: PucG Location: 158095-158479 bp Feature: domain Description: PucG Location: 158095-158479 bp Feature: gene Location: 158681-159976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158936-159626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158936-15962 6 bp Feature: gene Location: 160090-160311 bp Feature: gene Location: 160472-160939 bp Feature: domain Description: Hit Location: 160475-160910 bp Feature: domain Description: Hit Location: 160475-160910 bp Feature: gene Location: 339307-339621 bp Feature: domain Description: RHOD Location: 339334-339580 bp Feature: domain Description: RHOD Location: 339334-339580 bp Feature: gene Location: 339783-340289 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 339789-340095 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 339789-340095 bp Feature: gene Location: 340290-341060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340503-341049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340503-341049 bp Feature: gene Location: 341717-343042 bp Feature: domain Description: tspaseT_teng_C Location: 342542-342770 bp Feature: domain Description: tspaseT_teng_C Location: 342 542 -342 770 bp Feature: gene Location: 342946-343539 bp Feature: domain Description: Y1_Tnp Location: 343036-343393 bp Feature: domain Description: Y1_Tnp Location: 343036-343393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RutF (TIGR03615), PucG (COG0075), RVT-GII, Hit (COG0537), RHOD (smart00450), group_II_RT_mat (TIGR04416), tspaseT_teng_C (TIGR01766), Y1_Tnp (pfam01797)

Seq: CABFVC010000004.1 (627211 bp)
Overview 1 RT 1: 12610-16114 bp 2 RT 2: 54676-62068 bp 3 RT 3: 68306-73092 bp 4 RT 4: 89207-92755 bp 5 RT 5: 236815-242681 bp Neighborhood of RT #1 [12610, 16114] SalY RVT-GII AAA_18 Neighborhood of RT #2 [54676, 62079] SLR SEL1 SLR SEL1 SLR SEL1 SEL1 SLR SEL1 SLR SLR RVT-GII GIIM InsQ Neighborhood of RT #3 [68306, 73092] Phage_int_SAM_3 INT_ICEBs1_C_like CLF CLF RVT-GII Intron_maturas2 HNHc Neighborhood of RT #4 [89207, 92755] RVT-GII HNHc Maff2 Neighborhood of RT #5 [236815, 242752] RVT-CRISPR COG4951 Cas2_I_II_III Cas1_I-II-III Feature: gene Location: 12610-12861 bp Feature: domain Description: SalY Location: 12637-12838 bp Feature: domain Description: SalY Location: 1263 7-1283 8 bp Feature: gene Location: 12914-13249 bp Feature: gene Location: 13380-14675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13635-14325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 63 5-143 25 bp Feature: gene Location: 15055-15600 bp Feature: domain Description: AAA_18 Location: 15076-15454 bp Feature: domain Description: AAA_18 Location: 15076-15454 bp Feature: gene Location: 15674-16114 bp Feature: gene Location: 54676-57987 bp Feature: domain Description: SLR Location: 54847-55219 bp Feature: domain Description: SLR Location: 54847-55219 bp Feature: domain Description: SEL1 Location: 55225-55324 bp Feature: domain Description: SEL1 Location: 55225-553 24 bp Feature: domain Description: SLR Location: 55393-55759 bp Feature: domain Description: SLR Location: 553 93 -55759 bp Feature: domain Description: SEL1 Location: 55765-55864 bp Feature: domain Description: SEL1 Location: 55765-55864 bp Feature: domain Description: SLR Location: 55924-56293 bp Feature: domain Description: SLR Location: 55924-56293 bp Feature: domain Description: SEL1 Location: 56305-56404 bp Feature: domain Description: SEL1 Location: 563 05-56404 bp Feature: domain Description: SEL1 Location: 56413-56515 bp Feature: domain Description: SEL1 Location: 56413 -56515 bp Feature: domain Description: SLR Location: 56572-56959 bp Feature: domain Description: SLR Location: 56572-56959 bp Feature: domain Description: SEL1 Location: 57061-57163 bp Feature: domain Description: SEL1 Location: 57061-57163 bp Feature: domain Description: SLR Location: 57220-57616 bp Feature: domain Description: SLR Location: 57220-57616 bp Feature: domain Description: SLR Location: 57646-57901 bp Feature: domain Description: SLR Location: 57646-57901 bp Feature: gene Location: 58491-58877 bp Feature: gene Location: 59103-60380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59316-59934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 593 16-5993 4 bp Feature: domain Description: GIIM Note: maturase Location: 59994-60222 bp Feature: domain Description: GIIM Note: maturase Location: 59994-60222 bp Feature: gene Location: 60719-60907 bp Feature: gene Location: 60976-62079 bp Feature: domain Description: InsQ Location: 60979-62068 bp Feature: domain Description: InsQ Location: 60979-62068 bp Feature: gene Location: 68306-69496 bp Feature: domain Description: Phage_int_SAM_3 Location: 68483-68633 bp Feature: domain Description: Phage_int_SAM_3 Location: 68483 -6863 3 bp Feature: domain Description: INT_ICEBs1_C_like Location: 68810-69422 bp Feature: domain Description: INT_ICEBs1_C_like Location: 68810-69422 bp Feature: gene Location: 69514-69780 bp Feature: domain Description: CLF Location: 69544-69643 bp Feature: domain Description: CLF Location: 69544-69643 bp Feature: domain Description: CLF Location: 69670-69763 bp Feature: domain Description: CLF Location: 69670-69763 bp Feature: gene Location: 69777-71573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70062-70860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70062-70860 bp Feature: domain Description: Intron_maturas2 Location: 70947-71220 bp Feature: domain Description: Intron_maturas2 Location: 70947-71220 bp Feature: domain Description: HNHc Note: nucleases Location: 71400-71553 bp Feature: domain Description: HNHc Note: nucleases Location: 71400-71553 bp Feature: gene Location: 71700-71891 bp Feature: gene Location: 72097-73092 bp Feature: gene Location: 89207-89449 bp Feature: gene Location: 89475-89732 bp Feature: gene Location: 89853-91739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90186-90924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90186-90924 bp Feature: domain Description: HNHc Note: nucleases Location: 91461-91623 bp Feature: domain Description: HNHc Note: nucleases Location: 91461-91623 bp Feature: gene Location: 92444-92575 bp Feature: domain Description: Maff2 Location: 92447-92570 bp Feature: domain Description: Maff2 Location: 92447-92570 bp Feature: gene Location: 92615-92755 bp Feature: gene Location: 236815-237723 bp Feature: gene Location: 237769-237900 bp Feature: gene Location: 238606-241416 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 238813-239416 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 23 8813 -23 9416 bp Feature: domain Description: COG4951 Location: 240139-240700 bp Feature: domain Description: COG4951 Location: 24013 9-240700 bp Feature: gene Location: 241428-241736 bp Feature: domain Description: Cas2_I_II_III Location: 241434-241701 bp Feature: domain Description: Cas2_I_II_III Location: 24143 4-241701 bp Feature: gene Location: 241733-242752 bp Feature: domain Description: Cas1_I-II-III Location: 241745-242681 bp Feature: domain Description: Cas1_I-II-III Location: 241745-242681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SalY (COG0577), RVT-GII, AAA_18 (pfam13238), SLR (sd00010), SEL1 (smart00671), GIIM (pfam08388), InsQ (COG0675), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), CLF (cd00832)
Intron_maturas2 (pfam01348), HNHc (smart00507), Maff2 (pfam12750), RVT-CRISPR, COG4951 (Uncharacterized protein ), Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656)