myRT

myRT report for GCA_902155845.1_18174_8_15

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Seq: CABFWZ010000003.1 (87115 bp)
Overview 1 RT 1: 41440-46465 bp Neighborhood of RT #1 [41440, 46470] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 41440-42711 bp Feature: domain Description: umuC Location: 41443-42703 bp Feature: domain Description: umuC Location: 41 443-42703 bp Feature: gene Location: 42711-43394 bp Feature: domain Description: PRK10276 Location: 43014-43377 bp Feature: domain Description: PRK1 0276 Location: 4301 4-43377 bp Feature: gene Location: 43548-45035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43953-44643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43953-44643 bp Feature: gene Location: 45104-45373 bp Feature: gene Location: 45505-46470 bp Feature: domain Description: ArdC Location: 45631-46465 bp Feature: domain Description: ArdC Location: 45631 -46465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)

Seq: CABFWZ010000002.1 (150805 bp)
Overview 1 RT 1: 134892-138186 bp Neighborhood of RT #1 [134892, 138200] RVT-GII PRK10276 Feature: gene Location: 134892-135107 bp Feature: gene Location: 135374-135604 bp Feature: gene Location: 135838-137373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136243-136981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1362 43-136981 bp Feature: gene Location: 137424-137657 bp Feature: gene Location: 137775-138200 bp Feature: domain Description: PRK10276 Location: 137778-138186 bp Feature: domain Description: PRK102 76 Location: 137778-138186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CABFWZ010000001.1 (5380124 bp)
Overview 1 RT 1: 604922-608841 bp 2 RT 2: 652762-656729 bp 3 RT 3: 4283122-4287337 bp 4 RT 4: 4772318-4779171 bp Neighborhood of RT #1 [604922, 608852] DDE_Tnp_IS1 RVT-GII GIIM InsE Neighborhood of RT #2 [652762, 656743] Tra5 RVT-GII GIIM InsE Neighborhood of RT #3 [4283122, 4287351] SmpB RVT-UG11 D Neighborhood of RT #4 [4772318, 4779188] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 604922-605299 bp Feature: domain Description: DDE_Tnp_IS1 Location: 604925-605297 bp Feature: domain Description: DDE_Tnp_IS1 Location: 604925-605297 bp Feature: gene Location: 605690-605896 bp Feature: gene Location: 605983-607506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606256-606988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606256-606988 bp Feature: domain Description: GIIM Note: maturase Location: 607063-607261 bp Feature: domain Description: GIIM Note: maturase Location: 607063 -607261 bp Feature: gene Location: 608137-608430 bp Feature: gene Location: 608550-608852 bp Feature: domain Description: InsE Location: 608559-608841 bp Feature: domain Description: InsE Location: 608559-608841 bp Feature: gene Location: 652762-653451 bp Feature: domain Description: Tra5 Location: 652867-653293 bp Feature: domain Description: Tra5 Location: 652867-653 293 bp Feature: gene Location: 653603-653788 bp Feature: gene Location: 653875-655398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654148-654880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654148-654880 bp Feature: domain Description: GIIM Note: maturase Location: 654955-655153 bp Feature: domain Description: GIIM Note: maturase Location: 654955-655153 bp Feature: gene Location: 656029-656322 bp Feature: gene Location: 656471-656743 bp Feature: domain Description: InsE Location: 656480-656729 bp Feature: domain Description: InsE Location: 656480-656729 bp Feature: gene Location: 4283122-4283535 bp Feature: gene Location: 4283667-4284149 bp Feature: domain Description: SmpB Location: 4283697-4284141 bp Feature: domain Description: SmpB Location: 4283 697-4284141 bp Feature: gene Location: 4284765-4285064 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 4284768-4284879 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 4284768-4284879 bp Feature: gene Location: 4285507-4285695 bp Feature: gene Location: 4286251-4287351 bp Feature: domain Description: D Location: 4286257-4287337 bp Feature: domain Description: D Location: 4286257-42873 3 7 bp Feature: gene Location: 4772318-4772983 bp Feature: domain Description: INT_P4_C Location: 4772423-4772981 bp Feature: domain Description: INT_P4_C Location: 4772423 -4772981 bp Feature: gene Location: 4773244-4773684 bp Feature: domain Description: Integrase_1 Location: 4773250-4773466 bp Feature: domain Description: Integrase_1 Location: 4773 250-4773 466 bp Feature: gene Location: 4773741-4775819 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4774149-4774593 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4774149-4774593 bp Feature: gene Location: 4775819-4778428 bp Feature: domain Description: FimD Location: 4775876-4778417 bp Feature: domain Description: FimD Location: 4775876-4778417 bp Feature: gene Location: 4778460-4779188 bp Feature: domain Description: FimC Location: 4778508-4779171 bp Feature: domain Description: FimC Location: 4778508-4779171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), RVT-GII, GIIM (pfam08388), InsE (COG2963), Tra5 (COG2801), SmpB (pfam01668), RVT-UG11, D (PHA02561), INT_P4_C (cd00801), Integrase_1 (pfam12835)
RVT-UG4, FimD (COG3188), FimC (COG3121)