myRT

myRT report for GCA_902163395.1_25964_2_128

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Seq: CABGZM010000044.1 (35548 bp)
Overview 1 RT 1: 32300-35457 bp Neighborhood of RT #1 [32300, 35492] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 32300-32599 bp Feature: domain Description: InsE Location: 32309-32591 bp Feature: domain Description: InsE Location: 32309-32591 bp Feature: gene Location: 32629-33054 bp Feature: domain Description: PHA02517 Location: 32653-32989 bp Feature: domain Description: PHA0251 7 Location: 32653-32989 bp Feature: gene Location: 33646-35169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33919-34651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3391 9-34651 bp Feature: domain Description: GIIM Note: maturase Location: 34726-34924 bp Feature: domain Description: GIIM Note: maturase Location: 34726-34924 bp Feature: gene Location: 35334-35492 bp Feature: domain Description: PHA02517 Location: 35337-35457 bp Feature: domain Description: PHA0251 7 Location: 35337-35457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CABGZM010000011.1 (173807 bp)
Overview 1 RT 1: 2940-9632 bp Neighborhood of RT #1 [2940, 9898] AcrR COG3547 RVT-UG15 HNH_2 HTH_XRE Feature: gene Location: 2940-3599 bp Feature: domain Description: AcrR Location: 2976-3564 bp Feature: domain Description: AcrR Location: 2 976-3564 bp Feature: gene Location: 4068-5090 bp Feature: domain Description: COG3547 Location: 4083-5049 bp Feature: domain Description: COG3547 Location: 4083-5049 bp Feature: gene Location: 5906-7198 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 5993-6413 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 5993-6413 bp Feature: gene Location: 8260-9117 bp Feature: domain Description: HNH_2 Location: 8827-8974 bp Feature: domain Description: HNH_2 Location: 882 7-8974 bp Feature: gene Location: 9434-9898 bp Feature: domain Description: HTH_XRE Location: 9464-9632 bp Feature: domain Description: HTH_XRE Location: 9464-9632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), COG3547 (Transposase ), RVT-UG15, HNH_2 (pfam13391), HTH_XRE (smart00530)

Seq: CABGZM010000040.1 (44311 bp)
Overview 1 RT 1: 23373-27394 bp Neighborhood of RT #1 [23373, 27432] RVT-UG11 PRK04972 YbjM Feature: gene Location: 23373-23576 bp Feature: gene Location: 23915-24094 bp Feature: gene Location: 24057-24830 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24192-24645 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24192-24645 bp Feature: gene Location: 25096-26781 bp Feature: domain Description: PRK04972 Location: 25099-26770 bp Feature: domain Description: PRK04972 Location: 25099-26770 bp Feature: gene Location: 27049-27432 bp Feature: domain Description: YbjM Location: 27061-27394 bp Feature: domain Description: YbjM Location: 27061-273 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, PRK04972 (putative transporter; Provisional), YbjM (pfam11045)

Seq: CABGZM010000102.1 (1834 bp)
Overview 1 RT 1: 60-1831 bp Neighborhood of RT #1 [60, 1831] RVT-GII Feature: gene Location: 60-1520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438-1128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 38-1128 bp Feature: gene Location: 1544-1831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CABGZM010000032.1 (66676 bp)
Overview 1 RT 1: 54390-58851 bp Neighborhood of RT #1 [54390, 58853] BetT RVT-GII PRK09928 Feature: gene Location: 54390-54533 bp Feature: gene Location: 54941-56425 bp Feature: domain Description: BetT Location: 54977-56417 bp Feature: domain Description: BetT Location: 5 4977-5 6417 bp Feature: gene Location: 56474-57961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56879-57569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 6879-5 75 69 bp Feature: gene Location: 57986-58381 bp Feature: gene Location: 58392-58853 bp Feature: domain Description: PRK09928 Location: 58413-58851 bp Feature: domain Description: PRK09928 Location: 5 8413-5 885 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BetT (COG1292), RVT-GII, PRK09928 (choline transport protein BetT; Provisional)

Seq: CABGZM010000014.1 (167996 bp)
Overview 1 RT 1: 191-2966 bp Neighborhood of RT #1 [191, 2966] PHA02517 RVT-Retrons Feature: gene Location: 191-403 bp Feature: domain Description: PHA02517 Location: 194-395 bp Feature: domain Description: PHA02517 Location: 194-395 bp Feature: gene Location: 883-1086 bp Feature: gene Location: 1246-2064 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1282-1807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1282-1807 bp Feature: gene Location: 2281-2427 bp Feature: gene Location: 2487-2966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-Retrons