myRT

myRT report for GCA_902165835.1_26009_2_4

Download annotations/find similar RTs

Seq: CABHIG010000010.1 (242522 bp)
Overview 1 RT 1: 97314-105487 bp Neighborhood of RT #1 [97314, 105487] VirD4 RVT-GII Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII Intron_maturas2 T4SS-DNA_transf Feature: gene Location: 97314-98666 bp Feature: domain Description: VirD4 Location: 97551-98637 bp Feature: domain Description: VirD4 Location: 97551 -98637 bp Feature: gene Location: 98972-99103 bp Feature: gene Location: 99216-99875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99498-99870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99498-99870 bp Feature: gene Location: 100109-101344 bp Feature: domain Description: Phage_int_SAM_1 Location: 100460-100694 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 00460-1 00694 bp Feature: domain Description: INT_RitA_C_like Location: 100775-101315 bp Feature: domain Description: INT_RitA_C_like Location: 1 00775-1 01 31 5 bp Feature: gene Location: 101388-102320 bp Feature: domain Description: INT_RitB_C_like Location: 101673-102252 bp Feature: domain Description: INT_RitB_C_like Location: 1 01 673-1 02252 bp Feature: gene Location: 102298-103317 bp Feature: domain Description: Phage_int_SAM_1 Location: 102355-102592 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 02355-1 02592 bp Feature: domain Description: INT_RitC_C_like Location: 102682-103231 bp Feature: domain Description: INT_RitC_C_like Location: 1 02682-1 03231 bp Feature: gene Location: 103465-104589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103675-103870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 03675-1 03870 bp Feature: domain Description: Intron_maturas2 Location: 103954-104296 bp Feature: domain Description: Intron_maturas2 Location: 1 03954-1 04296 bp Feature: gene Location: 104757-105110 bp Feature: domain Description: T4SS-DNA_transf Location: 104763-104940 bp Feature: domain Description: T4SS-DNA_transf Location: 1 04763-1 04940 bp Feature: gene Location: 105107-105487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182), Intron_maturas2 (pfam01348), T4SS-DNA_transf (pfam02534)

Seq: CABHIG010000013.1 (214068 bp)
Overview 1 RT 1: 45862-49402 bp Neighborhood of RT #1 [45862, 49935] PGRP spore_SleB RVT-Retrons NapF Feature: gene Location: 45862-46581 bp Feature: domain Description: PGRP Location: 45928-46264 bp Feature: domain Description: PGRP Location: 4592 8-462 64 bp Feature: domain Description: spore_SleB Location: 46375-46567 bp Feature: domain Description: spore_SleB Location: 46375-46567 bp Feature: gene Location: 47106-47399 bp Feature: gene Location: 47635-48654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47800-48355 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47800-48355 bp Feature: gene Location: 48728-48883 bp Feature: gene Location: 49183-49935 bp Feature: domain Description: NapF Location: 49207-49402 bp Feature: domain Description: NapF Location: 492 07-49402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PGRP (smart00701), spore_SleB (TIGR02869), RVT-Retrons, NapF (COG1145)

Seq: CABHIG010000006.1 (341756 bp)
Overview 1 RT 1: 55891-61165 bp Neighborhood of RT #1 [55891, 61165] TnpV RVT-UG24 HDc Feature: gene Location: 55891-56271 bp Feature: domain Description: TnpV Location: 55933-56263 bp Feature: domain Description: TnpV Location: 5593 3 -56263 bp Feature: gene Location: 56426-56923 bp Feature: gene Location: 56865-60137 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 57426-57873 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 57426-57873 bp Feature: domain Description: HDc Location: 59100-59382 bp Feature: domain Description: HDc Location: 59100-593 82 bp Feature: gene Location: 60407-60550 bp Feature: gene Location: 60959-61165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), RVT-UG24, HDc (smart00471)