myRT

myRT report for GCA_902166885.1_K3087

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Seq: CABHKN010000001.1 (107211 bp)
Overview 1 RT 1: 5349-9845 bp 2 RT 2: 40082-44147 bp 3 RT 3: 99273-103769 bp Neighborhood of RT #1 [5349, 9845] umuC PRK10276 RVT-GII Neighborhood of RT #2 [40082, 44147] COG3547 RVT-GII GIIM Neighborhood of RT #3 [99273, 103769] umuC PRK10276 RVT-GII Feature: gene Location: 5349-6620 bp Feature: domain Description: umuC Location: 5352-6612 bp Feature: domain Description: umuC Location: 5352-661 2 bp Feature: gene Location: 6620-7432 bp Feature: domain Description: PRK10276 Location: 7052-7415 bp Feature: domain Description: PRK1 0276 Location: 7052-741 5 bp Feature: gene Location: 7457-8944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7862-8552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7862-8552 bp Feature: gene Location: 9013-9282 bp Feature: gene Location: 9414-9845 bp Feature: gene Location: 40082-41158 bp Feature: domain Description: COG3547 Location: 40121-41042 bp Feature: domain Description: COG3547 Location: 401 21 -41 042 bp Feature: gene Location: 41407-41613 bp Feature: gene Location: 41700-43223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41973-42705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 973-42705 bp Feature: domain Description: GIIM Note: maturase Location: 42780-42978 bp Feature: domain Description: GIIM Note: maturase Location: 42780-42978 bp Feature: gene Location: 43517-43954 bp Feature: gene Location: 43959-44147 bp Feature: gene Location: 99273-100544 bp Feature: domain Description: umuC Location: 99276-100536 bp Feature: domain Description: umuC Location: 99276-1 00536 bp Feature: gene Location: 100544-101356 bp Feature: domain Description: PRK10276 Location: 100976-101339 bp Feature: domain Description: PRK1 0276 Location: 1 00976-1 01 339 bp Feature: gene Location: 101381-102868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101786-102476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 786-1 02476 bp Feature: gene Location: 102937-103206 bp Feature: gene Location: 103338-103769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, COG3547 (Transposase ), GIIM (pfam08388)

Seq: CABHKN010000004.1 (207286 bp)
Overview 1 RT 1: 23464-27442 bp Neighborhood of RT #1 [23464, 27975] InsE PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_1_5 Feature: gene Location: 23464-23742 bp Feature: domain Description: InsE Location: 23476-23734 bp Feature: domain Description: InsE Location: 2 3476-2 3734 bp Feature: gene Location: 23799-24209 bp Feature: domain Description: PHA02517 Location: 23805-24144 bp Feature: domain Description: PHA02 517 Location: 2 3805-2 4144 bp Feature: gene Location: 24801-26324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25074-25806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5074-2 5806 bp Feature: domain Description: GIIM Note: maturase Location: 25881-26079 bp Feature: domain Description: GIIM Note: maturase Location: 2 5881-2 6079 bp Feature: gene Location: 26447-26881 bp Feature: domain Description: PHA02517 Location: 26450-26873 bp Feature: domain Description: PHA02 517 Location: 2 6450-2 6873 bp Feature: gene Location: 27007-27975 bp Feature: domain Description: DDE_Tnp_1_5 Location: 27109-27442 bp Feature: domain Description: DDE_Tnp_1_5 Location: 2 7109-2 7442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_5 (pfam13737)

Seq: CABHKN010000002.1 (5353978 bp)
Overview 1 RT 1: 2497163-2502654 bp 2 RT 2: 3714244-3718732 bp 3 RT 3: 4848354-4857159 bp 4 RT 4: 5025011-5028863 bp Neighborhood of RT #1 [2497163, 2502654] PHA00080 Phage_GPA RVT-GII DinI Neighborhood of RT #2 [3714244, 3718896] RVT-GII PRK10276 Neighborhood of RT #3 [4848354, 4857167] PRK15110 PRK09951 RVT-UG11 umuC PRK10276 RVT-GII PinE Neighborhood of RT #4 [5025011, 5028863] umuC PRK10276 RVT-GII Feature: gene Location: 2497163-2497384 bp Feature: domain Description: PHA00080 Location: 2497169-2497370 bp Feature: domain Description: PHA00080 Location: 2497169-24973 70 bp Feature: gene Location: 2497386-2499602 bp Feature: domain Description: Phage_GPA Location: 2497803-2498745 bp Feature: domain Description: Phage_GPA Location: 2497803 -2498745 bp Feature: gene Location: 2500065-2501552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2500470-2501160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2500470-2501160 bp Feature: gene Location: 2501657-2502070 bp Feature: domain Description: DinI Location: 2501885-2502068 bp Feature: domain Description: DinI Location: 2501885-2502068 bp Feature: gene Location: 2502355-2502654 bp Feature: gene Location: 3714244-3714987 bp Feature: gene Location: 3716318-3716611 bp Feature: gene Location: 3716765-3718252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3717170-3717860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 717170-3 717860 bp Feature: gene Location: 3718329-3718568 bp Feature: gene Location: 3718525-3718896 bp Feature: domain Description: PRK10276 Location: 3718570-3718732 bp Feature: domain Description: PRK10276 Location: 3 718570-3 71873 2 bp Feature: gene Location: 4848354-4849319 bp Feature: domain Description: PRK15110 Location: 4848357-4849317 bp Feature: domain Description: PRK15110 Location: 48483 57-48493 17 bp Feature: gene Location: 4849524-4850192 bp Feature: domain Description: PRK09951 Location: 4849527-4850190 bp Feature: domain Description: PRK09951 Location: 4849527-4850190 bp Feature: gene Location: 4850393-4851301 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 4850666-4851122 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 4850666-4851122 bp Feature: gene Location: 4851974-4853239 bp Feature: domain Description: umuC Location: 4851977-4853237 bp Feature: domain Description: umuC Location: 4851977-4853 23 7 bp Feature: gene Location: 4853241-4853660 bp Feature: domain Description: PRK10276 Location: 4853244-4853655 bp Feature: domain Description: PRK10276 Location: 4853 244-4853 655 bp Feature: gene Location: 4853740-4855224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4854142-4854832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4854142-485483 2 bp Feature: gene Location: 4855233-4855400 bp Feature: gene Location: 4856619-4857167 bp Feature: domain Description: PinE Location: 4856622-4857159 bp Feature: domain Description: PinE Location: 4856622-4857159 bp Feature: gene Location: 5025011-5026276 bp Feature: domain Description: umuC Location: 5025014-5026274 bp Feature: domain Description: umuC Location: 5025014-5026274 bp Feature: gene Location: 5026279-5026698 bp Feature: domain Description: PRK10276 Location: 5026282-5026693 bp Feature: domain Description: PRK10276 Location: 5026282-5026693 bp Feature: gene Location: 5026777-5028261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5027179-5027869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5027179-5027869 bp Feature: gene Location: 5028418-5028714 bp Feature: gene Location: 5028717-5028863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00080 (DksA-like zinc finger domain containing protein), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK15110 (peptide ABC transporter permease SapB), PRK09951 (hypothetical protein; Provisional), RVT-UG11, umuC (PRK03609), PinE (COG1961)