myRT

myRT report for GCA_902167525.1_Blautia_wexlerae_LFYP_14

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Seq: CABHOF010000034.1 (1880 bp)
Overview 1 RT 1: 146-1718 bp Neighborhood of RT #1 [146, 1816] RVT-GII GIIM Feature: gene Location: 146-289 bp Feature: gene Location: 341-529 bp Feature: gene Location: 560-1816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-1421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-1 421 bp Feature: domain Description: GIIM Note: maturase Location: 1505-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1 505-1 71 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CABHOF010000044.1 (4601 bp)
Overview 1 RT 1: 2-2045 bp Neighborhood of RT #1 [2, 2125] RVT-GII GIIM RAYT HTH_XRE DBD_HTH Feature: gene Location: 2-160 bp Feature: gene Location: 174-776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180-273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180-2 73 bp Feature: domain Description: GIIM Note: maturase Location: 327-558 bp Feature: domain Description: GIIM Note: maturase Location: 32 7-558 bp Feature: gene Location: 923-1276 bp Feature: domain Description: RAYT Location: 932-1199 bp Feature: domain Description: RAYT Location: 932 -1199 bp Feature: gene Location: 1703-2125 bp Feature: domain Description: HTH_XRE Location: 1745-1916 bp Feature: domain Description: HTH_XRE Location: 1745-1916 bp Feature: domain Description: DBD_HTH Location: 1952-2045 bp Feature: domain Description: DBD_HTH Location: 1952 -2 045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943), HTH_XRE (smart00530), DBD_HTH (pfam18430)

Seq: CABHOF010000015.1 (20145 bp)
Overview 1 RT 1: 89-4467 bp Neighborhood of RT #1 [89, 4511] RVT_N RVT-GII ADOP SalY YbbP SalY Feature: gene Location: 89-985 bp Feature: domain Description: RVT_N Location: 155-398 bp Feature: domain Description: RVT_N Location: 155-3 98 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-956 bp Feature: gene Location: 1228-1395 bp Feature: gene Location: 2133-4511 bp Feature: domain Description: ADOP Location: 2187-2313 bp Feature: domain Description: ADOP Location: 2187-23 13 bp Feature: domain Description: SalY Location: 2856-3258 bp Feature: domain Description: SalY Location: 2856-3 258 bp Feature: domain Description: YbbP Location: 3291-3411 bp Feature: domain Description: YbbP Location: 3 291-3 411 bp Feature: domain Description: SalY Location: 4083-4467 bp Feature: domain Description: SalY Location: 4083 -4467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, ADOP (TIGR03434), SalY (COG0577), YbbP (COG3127)

Seq: CABHOF010000084.1 (188774 bp)
Overview 1 RT 1: 11796-17125 bp 2 RT 2: 187189-188657 bp Neighborhood of RT #1 [11796, 17130] DUF3801 VirD4 RVT-GII TraG-D_C Maff2 Neighborhood of RT #2 [187189, 188686] RVT-GII Feature: gene Location: 11796-12266 bp Feature: domain Description: DUF3801 Location: 11865-12237 bp Feature: domain Description: DUF3801 Location: 11865-12237 bp Feature: gene Location: 12263-13063 bp Feature: domain Description: VirD4 Location: 12485-13001 bp Feature: domain Description: VirD4 Location: 124 85-13001 bp Feature: gene Location: 13689-15599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14019-14763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 019-14 763 bp Feature: gene Location: 15801-16829 bp Feature: domain Description: TraG-D_C Location: 16209-16566 bp Feature: domain Description: TraG-D_C Location: 16209-16566 bp Feature: gene Location: 16861-17130 bp Feature: domain Description: Maff2 Location: 16918-17125 bp Feature: domain Description: Maff2 Location: 16918-17125 bp Feature: gene Location: 187189-187407 bp Feature: gene Location: 187632-187811 bp Feature: gene Location: 187901-188686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188156-188657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188156-188657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, TraG-D_C (pfam12696), Maff2 (pfam12750)

Seq: CABHOF010000057.1 (1524 bp)
Overview 1 RT 1: 36-1407 bp Neighborhood of RT #1 [36, 1436] RVT-GII Feature: gene Location: 36-356 bp Feature: gene Location: 499-642 bp Feature: gene Location: 651-1436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 906-1407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 906-1407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CABHOF010000052.1 (1853 bp)
Overview 1 RT 1: 71-1850 bp Neighborhood of RT #1 [71, 1850] RVT-GII GIIM Feature: gene Location: 71-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-899 bp Feature: domain Description: GIIM Note: maturase Location: 965-1187 bp Feature: domain Description: GIIM Note: maturase Location: 96 5-1187 bp Feature: gene Location: 1698-1850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CABHOF010000037.1 (460705 bp)
Overview 1 RT 1: 243129-248018 bp Neighborhood of RT #1 [243129, 248018] Smc RVT-DGRs Feature: gene Location: 243129-245516 bp Feature: domain Description: Smc Location: 243624-244173 bp Feature: domain Description: Smc Location: 243624-24417 3 bp Feature: gene Location: 245704-245880 bp Feature: gene Location: 245910-247040 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 246117-246777 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 246117 -2467 7 7 bp Feature: gene Location: 247037-247303 bp Feature: gene Location: 247683-248018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Smc (COG1196), RVT-DGRs

Seq: CABHOF010000004.1 (100926 bp)
Overview 1 RT 1: 77-10911 bp 2 RT 2: 21571-27242 bp Neighborhood of RT #1 [77, 11054] Peptidase_M78 HepA RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Neighborhood of RT #2 [21571, 27259] Maff2 VirD4 RVT-GII T4SS-DNA_transf T4SS-DNA_transf DUF3801 Feature: gene Location: 77-835 bp Feature: domain Description: Peptidase_M78 Location: 593-788 bp Feature: domain Description: Peptidase_M78 Location: 593-78 8 bp Feature: gene Location: 888-2324 bp Feature: domain Description: HepA Location: 1158-1410 bp Feature: domain Description: HepA Location: 1158 -1410 bp Feature: gene Location: 2477-4264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2747-3536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2747-3536 bp Feature: domain Description: Intron_maturas2 Location: 3644-3860 bp Feature: domain Description: Intron_maturas2 Location: 3644-38 60 bp Feature: domain Description: HNHc Note: nucleases Location: 4040-4226 bp Feature: domain Description: HNHc Note: nucleases Location: 4040-4226 bp Feature: gene Location: 4339-4584 bp Feature: gene Location: 4755-11054 bp Feature: domain Description: N6_Mtase Location: 7887-8469 bp Feature: domain Description: N6_Mtase Location: 78 8 7-8 469 bp Feature: domain Description: COG4646 Location: 8529-10911 bp Feature: domain Description: COG4646 Location: 8 529-10911 bp Feature: gene Location: 21571-21783 bp Feature: domain Description: Maff2 Location: 21574-21781 bp Feature: domain Description: Maff2 Location: 21574-2178 1 bp Feature: gene Location: 22060-23109 bp Feature: domain Description: VirD4 Location: 22198-22978 bp Feature: domain Description: VirD4 Location: 22198 -22978 bp Feature: gene Location: 23258-25165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23588-24332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2358 8 -24332 bp Feature: gene Location: 25854-26618 bp Feature: domain Description: T4SS-DNA_transf Location: 26217-26367 bp Feature: domain Description: T4SS-DNA_transf Location: 26217-26367 bp Feature: domain Description: T4SS-DNA_transf Location: 26448-26607 bp Feature: domain Description: T4SS-DNA_transf Location: 26448 -26607 bp Feature: gene Location: 26741-27259 bp Feature: domain Description: DUF3801 Location: 26879-27242 bp Feature: domain Description: DUF38 01 Location: 268 79-27242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M78 (pfam06114), HepA (COG0553), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), Maff2 (pfam12750), VirD4 (COG3505), T4SS-DNA_transf (pfam02534)
DUF3801 (pfam12687)