myRT

myRT report for GCA_902362375.1_MGYG-HGUT-00013

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Seq: CABIVS010000002.1 (688440 bp)
Overview 1 RT 1: 251109-263726 bp 2 RT 2: 635056-637792 bp Neighborhood of RT #1 [251109, 263842] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Neighborhood of RT #2 [635056, 637792] RVT_N RVT-GII GIIM Feature: gene Location: 251109-251366 bp Feature: gene Location: 252442-254649 bp Feature: gene Location: 254854-255984 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 255175-255718 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2551 75-25571 8 bp Feature: gene Location: 255986-261943 bp Feature: domain Description: DUF4011 Location: 257216-257729 bp Feature: domain Description: DUF401 1 Location: 25721 6-257729 bp Feature: domain Description: DEXXQc_SF1 Location: 258068-259061 bp Feature: domain Description: DEXXQc_SF1 Location: 258068-259061 bp Feature: domain Description: DEXXQc_SF1 Location: 259496-260255 bp Feature: domain Description: DEXXQc_SF1 Location: 259496-260255 bp Feature: domain Description: TIGR00376 Location: 260384-260774 bp Feature: domain Description: TIGR00376 Location: 260384-260774 bp Feature: domain Description: MTES_1575 Location: 260927-261212 bp Feature: domain Description: MTES_1 575 Location: 260927-261 21 2 bp Feature: domain Description: DUF3320 Location: 261452-261593 bp Feature: domain Description: DUF3320 Location: 261 452-261 593 bp Feature: gene Location: 262040-263842 bp Feature: domain Description: rpsA Location: 262106-263726 bp Feature: domain Description: rpsA Location: 2621 06-263726 bp Feature: gene Location: 635056-635259 bp Feature: gene Location: 635285-635419 bp Feature: gene Location: 635821-637323 bp Feature: domain Description: RVT_N Location: 635887-636130 bp Feature: domain Description: RVT_N Location: 635887-6361 30 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 636175-636817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6361 75-63681 7 bp Feature: domain Description: GIIM Note: maturase Location: 636874-637105 bp Feature: domain Description: GIIM Note: maturase Location: 636874-6371 05 bp Feature: gene Location: 637409-637639 bp Feature: gene Location: 637646-637792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CABIVS010000009.1 (290341 bp)
Overview 1 RT 1: 184014-187957 bp 2 RT 2: 281982-285272 bp Neighborhood of RT #1 [184014, 187957] RVT-UG27 Neighborhood of RT #2 [281982, 285272] IS285 RVT_N RVT-GII GIIM Feature: gene Location: 184014-184394 bp Feature: gene Location: 184522-184749 bp Feature: gene Location: 185373-186635 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 185565-186201 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 185565-1862 01 bp Feature: gene Location: 186628-187296 bp Feature: gene Location: 187310-187957 bp Feature: gene Location: 281982-283187 bp Feature: domain Description: IS285 Location: 282021-283176 bp Feature: domain Description: IS2 85 Location: 2 82 02 1-2 83176 bp Feature: gene Location: 283200-283550 bp Feature: gene Location: 283559-285049 bp Feature: domain Description: RVT_N Location: 283628-283871 bp Feature: domain Description: RVT_N Location: 2 8362 8-2 83871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283916-284561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 83916-2 84561 bp Feature: domain Description: GIIM Note: maturase Location: 284615-284849 bp Feature: domain Description: GIIM Note: maturase Location: 2 84615-2 84849 bp Feature: gene Location: 284634-284915 bp Feature: gene Location: 284973-285272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, IS285 (COG3328), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CABIVS010000005.1 (589449 bp)
Overview 1 RT 1: 489536-494756 bp Neighborhood of RT #1 [489536, 494788] D-Ala-D-Ala_dipeptidase_Aad pcm Thump_like RVT_N RVT-GII GIIM Crp MmcQ Feature: gene Location: 489536-490312 bp Feature: domain Description: D-Ala-D-Ala_dipeptidase_Aad Location: 489785-490289 bp Feature: domain Description: D-Ala-D-Ala_dipeptidase_Aad Location: 489785-490289 bp Feature: gene Location: 490381-491571 bp Feature: domain Description: pcm Location: 490633-490858 bp Feature: domain Description: pcm Location: 49063 3 -490858 bp Feature: domain Description: Thump_like Location: 491353-491566 bp Feature: domain Description: Thump_like Location: 4913 53 -491566 bp Feature: gene Location: 492153-493643 bp Feature: domain Description: RVT_N Location: 492222-492465 bp Feature: domain Description: RVT_N Location: 492222-492465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492510-493155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492510-493 155 bp Feature: domain Description: GIIM Note: maturase Location: 493209-493443 bp Feature: domain Description: GIIM Note: maturase Location: 493 209-493 443 bp Feature: gene Location: 493811-494383 bp Feature: domain Description: Crp Location: 493853-494375 bp Feature: domain Description: Crp Location: 493 853 -4943 75 bp Feature: gene Location: 494405-494788 bp Feature: domain Description: MmcQ Location: 494408-494756 bp Feature: domain Description: MmcQ Location: 494408-494756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D-Ala-D-Ala_dipeptidase_Aad (cd14840), pcm (PRK00312), Thump_like (pfam18096), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Crp (pfam00325), MmcQ (COG2315)