myRT

myRT report for GCA_902362495.1_MGYG-HGUT-00022

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Seq: CABIWR010000001.1 (559371 bp)
Overview 1 RT 1: 150630-156330 bp Neighborhood of RT #1 [150630, 156725] RVT-GII HNHc TraC-F-type Cyt_C5_DNA_methylase Feature: gene Location: 150630-151616 bp Feature: gene Location: 151686-152135 bp Feature: gene Location: 152338-154311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152674-153412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 52674-1 5341 2 bp Feature: domain Description: HNHc Note: nucleases Location: 153961-154132 bp Feature: domain Description: HNHc Note: nucleases Location: 1 53961 -1 541 32 bp Feature: gene Location: 154402-155835 bp Feature: domain Description: TraC-F-type Location: 154429-155704 bp Feature: domain Description: TraC-F-type Location: 1 54429-1 55704 bp Feature: gene Location: 155832-156725 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 155847-156330 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 1 55847-1 56330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), TraC-F-type (TIGR02746), Cyt_C5_DNA_methylase (cl30459)

Seq: CABIWR010000008.1 (147599 bp)
Overview 1 RT 1: 22084-25996 bp 2 RT 2: 140043-146260 bp Neighborhood of RT #1 [22084, 26019] bZIP_2 RVT-DGRs Avd_like Neighborhood of RT #2 [140043, 146260] TraC-F-type TrbL RVT-GII Intron_maturas2 HNHc RVT-GII Feature: gene Location: 22084-22287 bp Feature: domain Description: bZIP_2 Location: 22141-22228 bp Feature: domain Description: bZIP_2 Location: 2 2 141-2 2 2 2 8 bp Feature: gene Location: 22280-24136 bp Feature: gene Location: 24048-25301 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24348-24993 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 4348-2 4993 bp Feature: gene Location: 25490-25627 bp Feature: gene Location: 25660-26019 bp Feature: domain Description: Avd_like Location: 25711-25996 bp Feature: domain Description: Avd_like Location: 2 5711-2 5996 bp Feature: gene Location: 140043-142163 bp Feature: domain Description: TraC-F-type Location: 140568-142032 bp Feature: domain Description: TraC-F-type Location: 140568-142 032 bp Feature: gene Location: 142810-143112 bp Feature: domain Description: TrbL Location: 142834-143071 bp Feature: domain Description: TrbL Location: 142 834-143071 bp Feature: gene Location: 143188-144210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143278-143473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1432 78-143473 bp Feature: domain Description: Intron_maturas2 Location: 143545-143860 bp Feature: domain Description: Intron_maturas2 Location: 143545-143860 bp Feature: domain Description: HNHc Note: nucleases Location: 144007-144181 bp Feature: domain Description: HNHc Note: nucleases Location: 144007-144181 bp Feature: gene Location: 144207-145019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144471-144915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144471-144915 bp Feature: gene Location: 145265-145480 bp Feature: gene Location: 145595-146260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bZIP_2 (pfam07716), RVT-DGRs, Avd_like (cd16376), TraC-F-type (TIGR02746), TrbL (pfam04610), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CABIWR010000002.1 (497218 bp)
Overview 1 RT 1: 6566-13542 bp 2 RT 2: 331716-335530 bp Neighborhood of RT #1 [6566, 13694] HTH_XRE TnpV RVT-GII HNHc Maff2 T4SS-DNA_transf Neighborhood of RT #2 [331716, 335530] pfam03781 Avd_like RVT-DGRs Feature: gene Location: 6566-7372 bp Feature: domain Description: HTH_XRE Location: 6593-6764 bp Feature: domain Description: HTH_XRE Location: 6593 -6764 bp Feature: gene Location: 8428-8805 bp Feature: domain Description: TnpV Location: 8473-8797 bp Feature: domain Description: TnpV Location: 8473 -8797 bp Feature: gene Location: 9391-11268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9718-10456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9718-10456 bp Feature: domain Description: HNHc Note: nucleases Location: 10993-11155 bp Feature: domain Description: HNHc Note: nucleases Location: 10993 -11155 bp Feature: gene Location: 11983-12114 bp Feature: domain Description: Maff2 Location: 11986-12109 bp Feature: domain Description: Maff2 Location: 11986-12109 bp Feature: gene Location: 12255-13694 bp Feature: domain Description: T4SS-DNA_transf Location: 12342-13542 bp Feature: domain Description: T4SS-DNA_transf Location: 123 42-13 542 bp Feature: gene Location: 331716-332813 bp Feature: domain Description: pfam03781 Location: 331956-332274 bp Feature: domain Description: pfam03 781 Location: 3 3 1956-3 3 2274 bp Feature: gene Location: 332885-333229 bp Feature: domain Description: Avd_like Location: 332909-333221 bp Feature: domain Description: Avd_like Location: 3 3 2909-3 3 3 221 bp Feature: gene Location: 333489-334802 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 333870-334536 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 3 3 870-3 3 453 6 bp Feature: gene Location: 334781-335137 bp Feature: gene Location: 335150-335530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), TnpV (pfam14198), RVT-GII, HNHc (smart00507), Maff2 (pfam12750), T4SS-DNA_transf (pfam02534), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs

Seq: CABIWR010000003.1 (409702 bp)
Overview 1 RT 1: 388890-394582 bp Neighborhood of RT #1 [388890, 394582] Eco57I HTH_XRE RVT-UG2 CxxCG_CxxCG_HTH GepA Feature: gene Location: 388890-390800 bp Feature: domain Description: Eco57I Location: 389748-390039 bp Feature: domain Description: Eco57I Location: 38974 8-390039 bp Feature: gene Location: 391100-391402 bp Feature: domain Description: HTH_XRE Location: 391109-391280 bp Feature: domain Description: HTH_XRE Location: 391109-391280 bp Feature: gene Location: 391461-392777 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 391659-392490 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 391659-3924 90 bp Feature: gene Location: 393173-394168 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 393197-393572 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 393197-393572 bp Feature: domain Description: GepA Location: 393710-394097 bp Feature: domain Description: GepA Location: 393710-394 097 bp Feature: gene Location: 394196-394582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Eco57I (pfam07669), HTH_XRE (smart00530), RVT-UG2, CxxCG_CxxCG_HTH (TIGR03830), GepA (COG3600)