myRT

myRT report for GCA_902363085.1_MGYG-HGUT-00095

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Seq: CABIZA010000009.1 (231146 bp)
Overview 1 RT 1: 60623-64523 bp Neighborhood of RT #1 [60623, 64579] HTH_32 rve pepcterm_ATPase RVT-GII DUF308 DUF308 Feature: gene Location: 60623-61834 bp Feature: domain Description: HTH_32 Location: 60761-60992 bp Feature: domain Description: HTH_32 Location: 60761 -60992 bp Feature: domain Description: rve Location: 61055-61412 bp Feature: domain Description: rve Location: 61 055-61 41 2 bp Feature: gene Location: 61834-62637 bp Feature: domain Description: pepcterm_ATPase Location: 61843-62623 bp Feature: domain Description: pepcterm_ATPase Location: 61 843-62623 bp Feature: gene Location: 62775-63209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63123-63186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 631 23-631 86 bp Feature: gene Location: 63459-63737 bp Feature: gene Location: 63884-64579 bp Feature: domain Description: DUF308 Location: 64037-64247 bp Feature: domain Description: DUF308 Location: 64037-64247 bp Feature: domain Description: DUF308 Location: 64385-64523 bp Feature: domain Description: DUF308 Location: 64385-64523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), rve (pfam00665), pepcterm_ATPase (TIGR03015), RVT-GII, DUF308 (pfam03729)

Seq: CABIZA010000021.1 (78187 bp)
Overview 1 RT 1: 58860-63041 bp Neighborhood of RT #1 [58860, 63043] RVT-UG8 RVT-UG3 KilA-N SR_TndX_transposase Feature: gene Location: 58860-59024 bp Feature: gene Location: 59178-59582 bp Feature: gene Location: 59518-60396 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 59836-60277 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 59836-602 77 bp Feature: gene Location: 60433-61425 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 60784-61264 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 60784-612 64 bp Feature: gene Location: 61549-62403 bp Feature: domain Description: KilA-N Location: 61630-61981 bp Feature: domain Description: KilA-N Location: 61630-61981 bp Feature: gene Location: 62735-63043 bp Feature: domain Description: SR_TndX_transposase Location: 62801-63041 bp Feature: domain Description: SR_TndX_transposase Location: 62 801-63041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3, KilA-N (pfam04383), SR_TndX_transposase (cd03770)

Seq: CABIZA010000002.1 (476531 bp)
Overview 1 RT 1: 111484-117013 bp Neighborhood of RT #1 [111484, 117036] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII Intron_maturas2 HNHc VirD4 VirD4 Feature: gene Location: 111484-113364 bp Feature: domain Description: SR_TndX_transposase Location: 111508-111916 bp Feature: domain Description: SR_TndX_transposase Location: 111508-111916 bp Feature: domain Description: Recombinase Location: 112015-112372 bp Feature: domain Description: Recombinase Location: 112015-1123 72 bp Feature: domain Description: Zn_ribbon_recom Location: 112420-112603 bp Feature: domain Description: Zn_ribbon_recom Location: 112420-112603 bp Feature: domain Description: DUF4368 Location: 112888-113074 bp Feature: domain Description: DUF43 68 Location: 112888-113 074 bp Feature: gene Location: 113438-113764 bp Feature: gene Location: 113836-115626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114112-114919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114112-114919 bp Feature: domain Description: Intron_maturas2 Location: 115096-115288 bp Feature: domain Description: Intron_maturas2 Location: 115096-115288 bp Feature: domain Description: HNHc Note: nucleases Location: 115462-115606 bp Feature: domain Description: HNHc Note: nucleases Location: 115462-115606 bp Feature: gene Location: 115642-116100 bp Feature: gene Location: 116254-117036 bp Feature: domain Description: VirD4 Location: 116497-116821 bp Feature: domain Description: VirD4 Location: 116497-116821 bp Feature: domain Description: VirD4 Location: 116899-117013 bp Feature: domain Description: VirD4 Location: 116899-117013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505)

Seq: CABIZA010000001.1 (771986 bp)
Overview 1 RT 1: 3823-9815 bp Neighborhood of RT #1 [3823, 9815] PrgI VirB4_CagE TraC-F-type RVT-GII Intron_maturas2 Feature: gene Location: 3823-4245 bp Feature: domain Description: PrgI Location: 3871-4144 bp Feature: domain Description: PrgI Location: 3871-4 14 4 bp Feature: gene Location: 4199-6346 bp Feature: domain Description: VirB4_CagE Location: 4292-4529 bp Feature: domain Description: VirB4 _CagE Location: 4 292-4 529 bp Feature: domain Description: TraC-F-type Location: 4967-6308 bp Feature: domain Description: TraC-F-type Location: 4 967-6308 bp Feature: gene Location: 6839-8629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7106-7919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7106-7919 bp Feature: domain Description: Intron_maturas2 Location: 8003-8297 bp Feature: domain Description: Intron_maturas2 Location: 8003-8297 bp Feature: gene Location: 8738-9088 bp Feature: gene Location: 9006-9815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), RVT-GII, Intron_maturas2 (pfam01348)

Seq: CABIZA010000022.1 (72098 bp)
Overview 1 RT 1: 68928-72097 bp Neighborhood of RT #1 [68928, 72097] VirD4 RVT_N RVT-GII GIIM Feature: gene Location: 68928-69581 bp Feature: domain Description: VirD4 Location: 69168-69573 bp Feature: domain Description: VirD4 Location: 69168-695 73 bp Feature: gene Location: 69772-69927 bp Feature: gene Location: 70165-71829 bp Feature: domain Description: RVT_N Location: 70210-70453 bp Feature: domain Description: RVT_N Location: 70210-7045 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70498-71149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70498-71149 bp Feature: domain Description: GIIM Note: maturase Location: 71200-71434 bp Feature: domain Description: GIIM Note: maturase Location: 71200-71434 bp Feature: gene Location: 71855-72097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CABIZA010000016.1 (125665 bp)
Overview 1 RT 1: 105645-108224 bp Neighborhood of RT #1 [105645, 108244] Phage_XkdX RVT-DGRs Phage_holin_Dp1 Feature: gene Location: 105645-105788 bp Feature: domain Description: Phage_XkdX Location: 105666-105783 bp Feature: domain Description: Phage_XkdX Location: 1056 6 6 -105783 bp Feature: gene Location: 105785-106273 bp Feature: gene Location: 106486-107682 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 106681-107398 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 106 6 81-107398 bp Feature: gene Location: 107707-108042 bp Feature: gene Location: 108029-108244 bp Feature: domain Description: Phage_holin_Dp1 Location: 108038-108224 bp Feature: domain Description: Phage_holin_Dp1 Location: 108038-108224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, Phage_holin_Dp1 (pfam16938)