myRT

myRT report for GCA_902363685.1_MGYG-HGUT-00140

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Seq: CABJBG010000010.1 (99498 bp)
Overview 1 RT 1: 35627-41562 bp Neighborhood of RT #1 [35627, 41562] YSH1 RVT-GII GIIM MATE_MepA_like Feature: gene Location: 35627-37237 bp Feature: domain Description: YSH1 Location: 35630-36962 bp Feature: domain Description: YSH1 Location: 35630-36962 bp Feature: gene Location: 37300-37428 bp Feature: gene Location: 37800-39194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38118-38742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 1 8-38742 bp Feature: domain Description: GIIM Note: maturase Location: 38799-39018 bp Feature: domain Description: GIIM Note: maturase Location: 38799-3901 8 bp Feature: gene Location: 39367-40716 bp Feature: domain Description: MATE_MepA_like Location: 39400-40687 bp Feature: domain Description: MATE_MepA_like Location: 39400-40687 bp Feature: gene Location: 41053-41562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YSH1 (COG1236), RVT-GII, GIIM (pfam08388), MATE_MepA_like (cd13143)

Seq: CABJBG010000005.1 (188071 bp)
Overview 1 RT 1: 30546-33936 bp 2 RT 2: 172941-179152 bp Neighborhood of RT #1 [30546, 33936] quorum_AgrD RVT-GII GIIM Neighborhood of RT #2 [172941, 179152] TIGR03986 Cas6 RVT-CRISPR Cas_Cas1 Y1_Tnp Feature: gene Location: 30546-30965 bp Feature: gene Location: 30984-31130 bp Feature: domain Description: quorum_AgrD Location: 31020-31125 bp Feature: domain Description: quorum_AgrD Location: 3102 0-3112 5 bp Feature: gene Location: 31360-32754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31678-32302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31678-32 302 bp Feature: domain Description: GIIM Note: maturase Location: 32359-32581 bp Feature: domain Description: GIIM Note: maturase Location: 32 359-32 581 bp Feature: gene Location: 32864-33172 bp Feature: gene Location: 33265-33936 bp Feature: gene Location: 172941-174836 bp Feature: domain Description: TIGR03986 Location: 172965-174648 bp Feature: domain Description: TIGR03986 Location: 172 965-174648 bp Feature: gene Location: 174855-175577 bp Feature: domain Description: Cas6 Location: 174858-175569 bp Feature: domain Description: Cas6 Location: 174858-175569 bp Feature: gene Location: 177003-178496 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 177225-177801 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1772 2 5-177801 bp Feature: domain Description: Cas_Cas1 Location: 177948-178473 bp Feature: domain Description: Cas_Cas1 Location: 177948-178473 bp Feature: gene Location: 178546-178950 bp Feature: domain Description: Y1_Tnp Location: 178582-178945 bp Feature: domain Description: Y1_Tnp Location: 178582 -178945 bp Feature: gene Location: 179006-179152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT quorum_AgrD (TIGR04223), RVT-GII, GIIM (pfam08388), TIGR03986 (CRISPR-associated protein), Cas6 (pfam09559), RVT-CRISPR, Cas_Cas1 (pfam01867), Y1_Tnp (pfam01797)

Seq: CABJBG010000020.1 (54684 bp)
Overview 1 RT 1: 4973-8770 bp Neighborhood of RT #1 [4973, 8772] rSAM_mob_pairA rSAM_mob_pairB RVT-GII BaeS NosY Feature: gene Location: 4973-5656 bp Feature: domain Description: rSAM_mob_pairA Location: 4982-5639 bp Feature: domain Description: rSAM_mob_pairA Location: 4982-563 9 bp Feature: gene Location: 5650-6558 bp Feature: domain Description: rSAM_mob_pairB Location: 5680-6532 bp Feature: domain Description: rSAM_mob_pairB Location: 5680-653 2 bp Feature: gene Location: 6680-6859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6710-6782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6710-6782 bp Feature: gene Location: 7015-7923 bp Feature: domain Description: BaeS Location: 7036-7864 bp Feature: domain Description: BaeS Location: 703 6-7864 bp Feature: gene Location: 7927-8772 bp Feature: domain Description: NosY Location: 7930-8770 bp Feature: domain Description: NosY Location: 793 0-8770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rSAM_mob_pairA (TIGR04471), rSAM_mob_pairB (TIGR04470), RVT-GII, BaeS (COG0642), NosY (COG1277)

Seq: CABJBG010000013.1 (80682 bp)
Overview 1 RT 1: 57019-60796 bp Neighborhood of RT #1 [57019, 60939] RVT-GII Intron_maturas2 HNHc SpoVG Feature: gene Location: 57019-57687 bp Feature: gene Location: 57802-58017 bp Feature: gene Location: 58263-60095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58527-59358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58527-59358 bp Feature: domain Description: Intron_maturas2 Location: 59430-59745 bp Feature: domain Description: Intron_maturas2 Location: 594 30-5974 5 bp Feature: domain Description: HNHc Note: nucleases Location: 59892-60066 bp Feature: domain Description: HNHc Note: nucleases Location: 59892-60066 bp Feature: gene Location: 60171-60473 bp Feature: gene Location: 60517-60939 bp Feature: domain Description: SpoVG Location: 60565-60796 bp Feature: domain Description: SpoVG Location: 60565-60796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SpoVG (pfam04026)