myRT

myRT report for GCA_902364555.1_MGYG-HGUT-00224

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Seq: CABJED010000006.1 (335577 bp)
Overview 1 RT 1: 220814-228713 bp Neighborhood of RT #1 [220814, 228730] COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C AtoC Feature: gene Location: 220814-221527 bp Feature: domain Description: COG4646 Location: 220889-221516 bp Feature: domain Description: COG4646 Location: 220889-221 51 6 bp Feature: gene Location: 221705-221974 bp Feature: gene Location: 222080-223882 bp Feature: domain Description: matK Location: 222149-222236 bp Feature: domain Description: matK Location: 2221 49-222236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222344-223166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222344-2231 66 bp Feature: domain Description: Intron_maturas2 Location: 223316-223550 bp Feature: domain Description: Intron_maturas2 Location: 22331 6-223550 bp Feature: gene Location: 223869-226634 bp Feature: domain Description: COG4646 Location: 223983-225123 bp Feature: domain Description: COG4646 Location: 223983-2251 23 bp Feature: domain Description: Helicase_C Location: 225336-225534 bp Feature: domain Description: Helicase_C Location: 225336-225534 bp Feature: gene Location: 227408-228730 bp Feature: domain Description: AtoC Location: 227414-228713 bp Feature: domain Description: AtoC Location: 22741 4-22871 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271), AtoC (COG2204)

Seq: CABJED010000001.1 (522010 bp)
Overview 1 RT 1: 22903-32827 bp Neighborhood of RT #1 [22903, 32874] COG3943 ComA-like_MBL-fold ComA-like_MBL-fold RVT-UG9 DNA_pol_A DNA_pol_A PRK15098 F5_F8_type_C Feature: gene Location: 22903-23901 bp Feature: domain Description: COG3943 Location: 22921-23884 bp Feature: domain Description: COG3943 Location: 2 2 92 1-2 3884 bp Feature: gene Location: 24139-25131 bp Feature: domain Description: ComA-like_MBL-fold Location: 24190-24454 bp Feature: domain Description: ComA-like_MBL-fold Location: 2 4190-2 4454 bp Feature: domain Description: ComA-like_MBL-fold Location: 24703-24871 bp Feature: domain Description: ComA-like_MBL-fold Location: 2 4703-2 4871 bp Feature: gene Location: 25106-27487 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 26024-26639 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2 602 4-2 6639 bp Feature: gene Location: 27484-28923 bp Feature: domain Description: DNA_pol_A Location: 28081-28537 bp Feature: domain Description: DNA_pol_A Location: 2 8081-2 8537 bp Feature: domain Description: DNA_pol_A Location: 28675-28822 bp Feature: domain Description: DNA_pol_A Location: 2 8675-2 882 2 bp Feature: gene Location: 30031-32874 bp Feature: domain Description: PRK15098 Location: 30208-32449 bp Feature: domain Description: PRK15098 Location: 302 08-32 449 bp Feature: domain Description: F5_F8_type_C Location: 32530-32827 bp Feature: domain Description: F5_F8_type_C Location: 32 530-32 82 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), ComA-like_MBL-fold (cd07731), RVT-UG9, DNA_pol_A (pfam00476), PRK15098 (beta-glucosidase BglX), F5_F8_type_C (pfam00754)

Seq: CABJED010000003.1 (450190 bp)
Overview 1 RT 1: 26532-30579 bp 2 RT 2: 368865-372301 bp 3 RT 3: 394445-401682 bp Neighborhood of RT #1 [26532, 30584] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Neighborhood of RT #2 [368865, 372306] DUF3873 RVT-AbiP2 DUF3872 TraO Neighborhood of RT #3 [394445, 401705] YWFCY RVT_N RVT-GII GIIM VirD4 RVT-GII Intron_maturas2 HNHc HTH_XRE Feature: gene Location: 26532-26957 bp Feature: domain Description: Bac_Flav_CT_N Location: 26535-26937 bp Feature: domain Description: Bac_Flav_CT_N Location: 2653 5-2693 7 bp Feature: gene Location: 27128-27463 bp Feature: gene Location: 27498-29309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27762-28584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27762-28584 bp Feature: domain Description: Intron_maturas2 Location: 28653-28962 bp Feature: domain Description: Intron_maturas2 Location: 28653 -28962 bp Feature: gene Location: 29299-30006 bp Feature: domain Description: Bac_Flav_CT_N Location: 29425-29986 bp Feature: domain Description: Bac_Flav_CT_N Location: 29425-29986 bp Feature: gene Location: 30009-30584 bp Feature: domain Description: TraO Location: 30084-30579 bp Feature: domain Description: TraO Location: 3 0084-3 0579 bp Feature: gene Location: 368865-369083 bp Feature: domain Description: DUF3873 Location: 368874-369069 bp Feature: domain Description: DUF3 873 Location: 3 68874-3 69069 bp Feature: gene Location: 369099-369581 bp Feature: gene Location: 369713-371221 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 370145-370601 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 70145-3 70601 bp Feature: gene Location: 371271-371711 bp Feature: domain Description: DUF3872 Location: 371301-371694 bp Feature: domain Description: DUF3 872 Location: 3 713 01-3 71694 bp Feature: gene Location: 371725-372306 bp Feature: domain Description: TraO Location: 371803-372301 bp Feature: domain Description: TraO Location: 3 71803 -3 723 01 bp Feature: gene Location: 394445-395167 bp Feature: domain Description: YWFCY Location: 394451-394628 bp Feature: domain Description: YWFCY Location: 3 94451-3 94628 bp Feature: gene Location: 395378-395554 bp Feature: gene Location: 395774-397456 bp Feature: domain Description: RVT_N Location: 395846-396086 bp Feature: domain Description: RVT_N Location: 3 95846-3 96086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396134-396788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 9613 4-3 96788 bp Feature: domain Description: GIIM Note: maturase Location: 396842-397073 bp Feature: domain Description: GIIM Note: maturase Location: 3 96842-3 97073 bp Feature: gene Location: 397459-398394 bp Feature: domain Description: VirD4 Location: 398098-398377 bp Feature: domain Description: VirD4 Location: 3 98098-3 983 77 bp Feature: gene Location: 398953-400764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399217-400039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 99217-40003 9 bp Feature: domain Description: Intron_maturas2 Location: 400165-400411 bp Feature: domain Description: Intron_maturas2 Location: 400165-400411 bp Feature: domain Description: HNHc Note: nucleases Location: 400567-400738 bp Feature: domain Description: HNHc Note: nucleases Location: 400567-40073 8 bp Feature: gene Location: 400751-401383 bp Feature: gene Location: 401502-401705 bp Feature: domain Description: HTH_XRE Location: 401514-401682 bp Feature: domain Description: HTH_XRE Location: 401514-401682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626), DUF3873 (pfam12989), RVT-AbiP2, DUF3872 (pfam12988), YWFCY (pfam14293), RVT_N (pfam13655), GIIM (pfam08388)
VirD4 (COG3505), HNHc (smart00507), HTH_XRE (smart00530)