myRT

myRT report for GCA_902364755.1_MGYG-HGUT-00251

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Seq: CABJFB010000001.1 (875523 bp)
Overview 1 RT 1: 427543-432737 bp Neighborhood of RT #1 [427543, 433015] TnpW RVT_N RVT-GII RVT-GII GIIM SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Feature: gene Location: 427543-427728 bp Feature: domain Description: TnpW Location: 427606-427702 bp Feature: domain Description: TnpW Location: 427606-427702 bp Feature: gene Location: 427754-428008 bp Feature: gene Location: 428591-429382 bp Feature: domain Description: RVT_N Location: 428636-428879 bp Feature: domain Description: RVT_N Location: 428636-428879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428924-429239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428924-429239 bp Feature: gene Location: 429198-430256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429201-429576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429201 -429576 bp Feature: domain Description: GIIM Note: maturase Location: 429627-429861 bp Feature: domain Description: GIIM Note: maturase Location: 429627-429861 bp Feature: gene Location: 430400-430819 bp Feature: gene Location: 431132-433015 bp Feature: domain Description: SR_TndX_transposase Location: 431159-431573 bp Feature: domain Description: SR_TndX_transposase Location: 431 1 59-431 573 bp Feature: domain Description: Recombinase Location: 431672-432041 bp Feature: domain Description: Recombinase Location: 431 672-432041 bp Feature: domain Description: Zn_ribbon_recom Location: 432083-432266 bp Feature: domain Description: Zn_ribbon_recom Location: 432083-432266 bp Feature: domain Description: DUF4368 Location: 432542-432737 bp Feature: domain Description: DUF4368 Location: 432542-432737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpW (pfam14202), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287)

Seq: CABJFB010000020.1 (50402 bp)
Overview 1 RT 1: 32781-38580 bp Neighborhood of RT #1 [32781, 38582] ParB_N_like RVT-GII GIIM SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Feature: gene Location: 32781-33152 bp Feature: gene Location: 33447-34826 bp Feature: domain Description: ParB_N_like Location: 33984-34239 bp Feature: domain Description: ParB_N_like Location: 33984-342 39 bp Feature: gene Location: 34943-36232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35234-35867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352 34-35867 bp Feature: domain Description: GIIM Note: maturase Location: 35948-36173 bp Feature: domain Description: GIIM Note: maturase Location: 35948-36173 bp Feature: gene Location: 36474-36728 bp Feature: gene Location: 36960-38582 bp Feature: domain Description: SR_TndX_transposase Location: 36996-37410 bp Feature: domain Description: SR_TndX_transposase Location: 36996-37410 bp Feature: domain Description: Recombinase Location: 37512-37893 bp Feature: domain Description: Recombinase Location: 37512 -37893 bp Feature: domain Description: Zn_ribbon_recom Location: 37926-38106 bp Feature: domain Description: Zn_ribbon_recom Location: 3792 6-38106 bp Feature: domain Description: DUF4368 Location: 38382-38580 bp Feature: domain Description: DUF4368 Location: 38382 -38580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParB_N_like (cd16411), RVT-GII, GIIM (pfam08388), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287)

Seq: CABJFB010000015.1 (71033 bp)
Overview 1 RT 1: 23656-28158 bp Neighborhood of RT #1 [23656, 28193] LacZ PRK10572 PRK10572 RVT-GII PolyPPase_VTC_like Feature: gene Location: 23656-25374 bp Feature: domain Description: LacZ Location: 23707-24973 bp Feature: domain Description: LacZ Location: 23 707-24973 bp Feature: gene Location: 25443-26363 bp Feature: domain Description: PRK10572 Location: 25677-25812 bp Feature: domain Description: PRK10572 Location: 25677-25812 bp Feature: domain Description: PRK10572 Location: 26013-26337 bp Feature: domain Description: PRK10572 Location: 26013 -263 3 7 bp Feature: gene Location: 26638-26973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26776-26965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26776-26965 bp Feature: gene Location: 26990-27277 bp Feature: gene Location: 27498-28193 bp Feature: domain Description: PolyPPase_VTC_like Location: 27516-28158 bp Feature: domain Description: PolyPPase_VTC_like Location: 27516-28158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacZ (COG3250), PRK10572 (arabinose operon transcriptional regulator AraC), RVT-GII, PolyPPase_VTC_like (cd07750)

Seq: CABJFB010000003.1 (299909 bp)
Overview 1 RT 1: 12147-18353 bp Neighborhood of RT #1 [12147, 18400] HTH_28 HTH_28 HTH_28 PHA02517 DDE_Tnp_IS66 DDE_Tnp_IS66_C AAAA RVT-GII PHA02517 IstB_IS21 Feature: gene Location: 12147-14885 bp Feature: domain Description: HTH_28 Location: 12180-12315 bp Feature: domain Description: HTH_28 Location: 12180-12315 bp Feature: domain Description: HTH_28 Location: 12354-12477 bp Feature: domain Description: HTH_28 Location: 12354 -124 77 bp Feature: domain Description: HTH_28 Location: 12549-12696 bp Feature: domain Description: HTH_28 Location: 1254 9-12696 bp Feature: domain Description: PHA02517 Location: 12927-13710 bp Feature: domain Description: PHA02517 Location: 12927-13710 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13779-14613 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13779-14 613 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 14637-14760 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 14 637-14 760 bp Feature: gene Location: 15145-16542 bp Feature: domain Description: AAAA Location: 15154-16372 bp Feature: domain Description: AAAA Location: 15154 -16372 bp Feature: gene Location: 17075-17554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17285-17486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17285-174 86 bp Feature: gene Location: 17491-18138 bp Feature: domain Description: PHA02517 Location: 17563-18103 bp Feature: domain Description: PHA02517 Location: 17563-18103 bp Feature: gene Location: 18161-18400 bp Feature: domain Description: IstB_IS21 Location: 18167-18353 bp Feature: domain Description: IstB_IS21 Location: 18167-18353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), AAAA (COG1672), RVT-GII, IstB_IS21 (pfam01695)