myRT

myRT report for GCA_902374315.1_MGYG-HGUT-01367

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Seq: CABKPP010000013.1 (89986 bp)
Overview 1 RT 1: 6449-10835 bp Neighborhood of RT #1 [6449, 10852] AcrR RVT-GII GIIM CDP-ME_synthetase Feature: gene Location: 6449-7069 bp Feature: domain Description: AcrR Location: 6479-6785 bp Feature: domain Description: AcrR Location: 6479-6785 bp Feature: gene Location: 7302-7787 bp Feature: gene Location: 7997-8599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8003-8150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8003-81 50 bp Feature: domain Description: GIIM Note: maturase Location: 8204-8432 bp Feature: domain Description: GIIM Note: maturase Location: 8204-8432 bp Feature: gene Location: 8669-9913 bp Feature: gene Location: 10130-10852 bp Feature: domain Description: CDP-ME_synthetase Location: 10160-10835 bp Feature: domain Description: CDP-ME_synthetase Location: 1 01 60-1 0835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), RVT-GII, GIIM (pfam08388), CDP-ME_synthetase (cd02516)

Seq: CABKPP010000001.1 (1043879 bp)
Overview 1 RT 1: 512381-515660 bp Neighborhood of RT #1 [512381, 515680] RVT-DGRs Phage_XkdX Feature: gene Location: 512381-513619 bp Feature: gene Location: 513800-513994 bp Feature: gene Location: 514077-515375 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 514338-514965 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 514338-514965 bp Feature: gene Location: 515212-515526 bp Feature: gene Location: 515528-515680 bp Feature: domain Description: Phage_XkdX Location: 515549-515660 bp Feature: domain Description: Phage_XkdX Location: 515549-515660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: CABKPP010000005.1 (427100 bp)
Overview 1 RT 1: 243805-251809 bp Neighborhood of RT #1 [243805, 251809] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII Intron_maturas2 HNHc VirD4 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 243805-245685 bp Feature: domain Description: SR_TndX_transposase Location: 243829-244237 bp Feature: domain Description: SR_TndX_transposase Location: 243 829-24423 7 bp Feature: domain Description: Recombinase Location: 244336-244696 bp Feature: domain Description: Recombinase Location: 2443 3 6-244696 bp Feature: domain Description: Zn_ribbon_recom Location: 244741-244924 bp Feature: domain Description: Zn_ribbon_recom Location: 244741-244924 bp Feature: domain Description: DUF4368 Location: 245209-245395 bp Feature: domain Description: DUF43 68 Location: 245209-2453 95 bp Feature: gene Location: 245759-246088 bp Feature: gene Location: 246160-247950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246433-247243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24643 3 -247243 bp Feature: domain Description: Intron_maturas2 Location: 247420-247609 bp Feature: domain Description: Intron_maturas2 Location: 247420-247609 bp Feature: domain Description: HNHc Note: nucleases Location: 247786-247930 bp Feature: domain Description: HNHc Note: nucleases Location: 247786-24793 0 bp Feature: gene Location: 247966-248424 bp Feature: gene Location: 248578-248841 bp Feature: domain Description: VirD4 Location: 248620-248815 bp Feature: domain Description: VirD4 Location: 248620-248815 bp Feature: gene Location: 248932-250749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249196-250015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249196-250015 bp Feature: domain Description: Intron_maturas2 Location: 250087-250390 bp Feature: domain Description: Intron_maturas2 Location: 250087-2503 90 bp Feature: domain Description: HNHc Note: nucleases Location: 250570-250714 bp Feature: domain Description: HNHc Note: nucleases Location: 250570-250714 bp Feature: gene Location: 251036-251176 bp Feature: gene Location: 251309-251809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505)

Seq: CABKPP010000024.1 (2379 bp)
Overview 1 RT 1: 1-2142 bp Neighborhood of RT #1 [1, 2309] PRK05912 RVT-GII GIIM Feature: gene Location: 1-285 bp Feature: domain Description: PRK05912 Location: 16-265 bp Feature: domain Description: PRK05912 Location: 16-265 bp Feature: gene Location: 918-2309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1233-1860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1233-1860 bp Feature: domain Description: GIIM Note: maturase Location: 1914-2142 bp Feature: domain Description: GIIM Note: maturase Location: 1914 -214 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05912 (tyrosyl-tRNA synthetase; Validated), RVT-GII, GIIM (pfam08388)

Seq: CABKPP010000002.1 (697456 bp)
Overview 1 RT 1: 22700-26833 bp 2 RT 2: 215961-220318 bp 3 RT 3: 691849-696962 bp Neighborhood of RT #1 [22700, 26874] DUF4097 RVT-GII GIIM LytT SASP Neighborhood of RT #2 [215961, 220335] YsxB-like RpmA RVT-GII GIIM obgE YhbY Neighborhood of RT #3 [691849, 696964] MviM MviM LysR RVT-Retrons YuiF Feature: gene Location: 22700-23635 bp Feature: domain Description: DUF4097 Location: 23000-23399 bp Feature: domain Description: DUF4097 Location: 23000-23399 bp Feature: gene Location: 23792-23923 bp Feature: gene Location: 23940-25544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24468-25095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24468-25 095 bp Feature: domain Description: GIIM Note: maturase Location: 25149-25368 bp Feature: domain Description: GIIM Note: maturase Location: 25 149-25 368 bp Feature: gene Location: 25632-26354 bp Feature: domain Description: LytT Location: 25635-26304 bp Feature: domain Description: LytT Location: 25 635 -26304 bp Feature: gene Location: 26656-26874 bp Feature: domain Description: SASP Location: 26716-26833 bp Feature: domain Description: SASP Location: 26716-26833 bp Feature: gene Location: 215961-216290 bp Feature: domain Description: YsxB-like Location: 215964-216273 bp Feature: domain Description: YsxB-like Location: 215 964-216273 bp Feature: gene Location: 216294-216584 bp Feature: domain Description: RpmA Location: 216321-216570 bp Feature: domain Description: RpmA Location: 216321-2165 70 bp Feature: gene Location: 217768-218517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217771-218068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217771-218068 bp Feature: domain Description: GIIM Note: maturase Location: 218122-218350 bp Feature: domain Description: GIIM Note: maturase Location: 218122-21835 0 bp Feature: gene Location: 218696-219979 bp Feature: domain Description: obgE Location: 218699-219974 bp Feature: domain Description: obgE Location: 218699-219974 bp Feature: gene Location: 220039-220335 bp Feature: domain Description: YhbY Location: 220042-220318 bp Feature: domain Description: YhbY Location: 220042-220318 bp Feature: gene Location: 691849-693033 bp Feature: domain Description: MviM Location: 691870-692167 bp Feature: domain Description: MviM Location: 691870-692167 bp Feature: domain Description: MviM Location: 692242-693025 bp Feature: domain Description: MviM Location: 692242-693025 bp Feature: gene Location: 693355-694299 bp Feature: domain Description: LysR Location: 693394-694252 bp Feature: domain Description: LysR Location: 693394-69425 2 bp Feature: gene Location: 694358-695344 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 694523-695078 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6945 23-695 078 bp Feature: gene Location: 695372-695584 bp Feature: gene Location: 695642-696964 bp Feature: domain Description: YuiF Location: 695663-696962 bp Feature: domain Description: YuiF Location: 695 663-696962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4097 (pfam13349), RVT-GII, GIIM (pfam08388), LytT (COG3279), SASP (pfam00269), YsxB-like, RpmA (COG0211), obgE (PRK12299), YhbY (COG1534), MviM (COG0673)
LysR (COG0583), RVT-Retrons, YuiF (COG2056)

Seq: CABKPP010000003.1 (647965 bp)
Overview 1 RT 1: 150697-154731 bp Neighborhood of RT #1 [150697, 154731] GATase1_DJ-1 DUF975 RVT-DGRs Feature: gene Location: 150697-151251 bp Feature: domain Description: GATase1_DJ-1 Location: 150709-151192 bp Feature: domain Description: GATase1_DJ-1 Location: 150709-151192 bp Feature: gene Location: 151308-152150 bp Feature: domain Description: DUF975 Location: 151710-152001 bp Feature: domain Description: DUF975 Location: 151710-152001 bp Feature: gene Location: 152882-154084 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 153101-153794 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 153101-153794 bp Feature: gene Location: 154256-154423 bp Feature: gene Location: 154567-154731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GATase1_DJ-1 (cd03135), DUF975 (pfam06161), RVT-DGRs

Seq: CABKPP010000006.1 (329209 bp)
Overview 1 RT 1: 200888-206369 bp Neighborhood of RT #1 [200888, 206369] FmnP esterase_phb RVT-GII GIIM Feature: gene Location: 200888-201508 bp Feature: domain Description: FmnP Location: 200921-201476 bp Feature: domain Description: FmnP Location: 200921-20147 6 bp Feature: gene Location: 202137-204377 bp Feature: domain Description: esterase_phb Location: 203532-203940 bp Feature: domain Description: esterase_phb Location: 203532-203940 bp Feature: gene Location: 204440-205987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205400-205538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205400-205538 bp Feature: domain Description: GIIM Note: maturase Location: 205592-205820 bp Feature: domain Description: GIIM Note: maturase Location: 205592-205820 bp Feature: gene Location: 204851-206155 bp Feature: gene Location: 206235-206369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FmnP (COG3601), esterase_phb (TIGR01840), RVT-GII, GIIM (pfam08388)