myRT

myRT report for GCA_902374585.1_MGYG-HGUT-01386

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Seq: CABKQO010000012.1 (79205 bp)
Overview 1 RT 1: 81-2384 bp 2 RT 2: 32512-36435 bp Neighborhood of RT #1 [81, 2384] RVT-GII HNHc Neighborhood of RT #2 [32512, 36500] UppP RVT-GII GIIM sigma70-ECF HTH_17 Feature: gene Location: 81-1424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102-594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 02-594 bp Feature: domain Description: HNHc Note: nucleases Location: 1176-1314 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 76-1 31 4 bp Feature: gene Location: 1847-1987 bp Feature: gene Location: 2169-2384 bp Feature: gene Location: 32512-33180 bp Feature: domain Description: UppP Location: 32527-33175 bp Feature: domain Description: UppP Location: 32527-331 75 bp Feature: gene Location: 33570-33719 bp Feature: gene Location: 33757-35148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34072-34696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34072-34696 bp Feature: domain Description: GIIM Note: maturase Location: 34753-34966 bp Feature: domain Description: GIIM Note: maturase Location: 34753-34966 bp Feature: gene Location: 35320-35790 bp Feature: domain Description: sigma70-ECF Location: 35596-35782 bp Feature: domain Description: sigma70-ECF Location: 35596-35782 bp Feature: gene Location: 36270-36500 bp Feature: domain Description: HTH_17 Location: 36285-36435 bp Feature: domain Description: HTH_1 7 Location: 36285-36435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), UppP (COG1968), GIIM (pfam08388), sigma70-ECF (TIGR02937), HTH_17 (pfam12728)

Seq: CABKQO010000019.1 (28017 bp)
Overview 1 RT 1: 52-4637 bp Neighborhood of RT #1 [52, 4681] HTH_Tnp_1 COG3943 RVT-Retrons DDE_Tnp_IS66_C Feature: gene Location: 52-420 bp Feature: domain Description: HTH_Tnp_1 Location: 136-259 bp Feature: domain Description: HTH_Tnp_1 Location: 136-2 59 bp Feature: gene Location: 973-1995 bp Feature: domain Description: COG3943 Location: 991-1960 bp Feature: domain Description: COG3943 Location: 991-1960 bp Feature: gene Location: 2088-4067 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3225-3789 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 2 5-3789 bp Feature: gene Location: 4111-4341 bp Feature: gene Location: 4505-4681 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4514-4637 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4514-4637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), COG3943 (Uncharacterized conserved protein ), RVT-Retrons, DDE_Tnp_IS66_C (pfam13817)

Seq: CABKQO010000003.1 (722831 bp)
Overview 1 RT 1: 369408-375038 bp Neighborhood of RT #1 [369408, 375038] RVT-GII RVT-GII HNHc Feature: gene Location: 369408-370022 bp Feature: gene Location: 370093-371730 bp Feature: gene Location: 372460-373416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372775-373402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 72775-3 73 402 bp Feature: gene Location: 373407-374345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373413-373500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 73 413 -3 73 500 bp Feature: domain Description: HNHc Note: nucleases Location: 374058-374226 bp Feature: domain Description: HNHc Note: nucleases Location: 3 74058-3 74226 bp Feature: gene Location: 374366-374512 bp Feature: gene Location: 374574-375038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: CABKQO010000028.1 (2521 bp)
Overview 1 RT 1: 275-2362 bp Neighborhood of RT #1 [275, 2397] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 275-541 bp Feature: gene Location: 580-2397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 844-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 4 -1663 bp Feature: domain Description: Intron_maturas2 Location: 1735-2038 bp Feature: domain Description: Intron_maturas2 Location: 1735-2038 bp Feature: domain Description: HNHc Note: nucleases Location: 2218-2362 bp Feature: domain Description: HNHc Note: nucleases Location: 2218-2362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CABKQO010000021.1 (18608 bp)
Overview 1 RT 1: 1-1269 bp Neighborhood of RT #1 [1, 1269] RVT-CRISPR-like Feature: gene Location: 1-297 bp Feature: gene Location: 468-632 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 471-585 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 471-5 85 bp Feature: gene Location: 695-985 bp Feature: gene Location: 1108-1269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: CABKQO010000001.1 (1310576 bp)
Overview 1 RT 1: 131169-140509 bp 2 RT 2: 860483-863396 bp Neighborhood of RT #1 [131169, 140523] RVT-GII RVT-GII INT_RitC_C_like HicB bPH_2 RVT-GII InsE PHA02517 Neighborhood of RT #2 [860483, 863396] Avd_like RVT-DGRs Feature: gene Location: 131169-131381 bp Feature: gene Location: 131530-132339 bp Feature: gene Location: 132290-132622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132515-132620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132515-1326 20 bp Feature: gene Location: 132716-132970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132722-132899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132722-132899 bp Feature: gene Location: 133021-134613 bp Feature: domain Description: INT_RitC_C_like Location: 134284-134533 bp Feature: domain Description: INT_RitC_C_like Location: 134284-134533 bp Feature: gene Location: 134863-135312 bp Feature: gene Location: 136627-136977 bp Feature: domain Description: HicB Location: 136636-136957 bp Feature: domain Description: HicB Location: 136 6 36 -136 957 bp Feature: gene Location: 137299-137730 bp Feature: domain Description: bPH_2 Location: 137371-137596 bp Feature: domain Description: bPH_2 Location: 137371-137596 bp Feature: gene Location: 138660-139220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138948-139206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138948-139206 bp Feature: gene Location: 139286-139618 bp Feature: domain Description: InsE Location: 139295-139604 bp Feature: domain Description: InsE Location: 139295-1396 04 bp Feature: gene Location: 139651-140523 bp Feature: domain Description: PHA02517 Location: 139687-140509 bp Feature: domain Description: PHA02517 Location: 1396 87-140509 bp Feature: gene Location: 860483-861247 bp Feature: gene Location: 861347-861709 bp Feature: domain Description: Avd_like Location: 861368-861695 bp Feature: domain Description: Avd_like Location: 86 136 8-86 16 95 bp Feature: gene Location: 861936-862973 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 862146-862746 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 86 2146 -86 2746 bp Feature: gene Location: 863010-863189 bp Feature: gene Location: 863232-863396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_RitC_C_like (cd01182), HicB (pfam05534), bPH_2 (pfam03703), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Avd_like (cd16376), RVT-DGRs

Seq: CABKQO010000006.1 (276472 bp)
Overview 1 RT 1: 207740-210613 bp Neighborhood of RT #1 [207740, 210613] group_II_RT_mat RVT-GII GIIM Feature: gene Location: 207740-207907 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 207746-207899 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 207 7 46-207 899 bp Feature: gene Location: 207952-208218 bp Feature: gene Location: 208535-209125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208541-208670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208541-20867 0 bp Feature: domain Description: GIIM Note: maturase Location: 208733-208961 bp Feature: domain Description: GIIM Note: maturase Location: 2087 33-208961 bp Feature: gene Location: 209931-210278 bp Feature: gene Location: 210299-210613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: CABKQO010000008.1 (166880 bp)
Overview 1 RT 1: 13052-20152 bp 2 RT 2: 111973-114538 bp Neighborhood of RT #1 [13052, 20259] BglG PTS_EIIA_2 RVT-GII INT_RitC_C_like Phage_int_SAM_1 INT_RitB_C_like RVT-GII GIIM PHA02517 HTH_21 Neighborhood of RT #2 [111973, 114597] RVT-GII YhcG YhcG_C Feature: gene Location: 13052-15007 bp Feature: domain Description: BglG Location: 13055-14378 bp Feature: domain Description: BglG Location: 13055-14378 bp Feature: domain Description: PTS_EIIA_2 Location: 14612-14993 bp Feature: domain Description: PTS_EIIA_2 Location: 14612-14993 bp Feature: gene Location: 15038-15337 bp Feature: gene Location: 15445-16203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15793-16081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15793-1608 1 bp Feature: gene Location: 16384-16584 bp Feature: domain Description: INT_RitC_C_like Location: 16396-16582 bp Feature: domain Description: INT_RitC_C_like Location: 16396-1658 2 bp Feature: gene Location: 16710-17078 bp Feature: domain Description: Phage_int_SAM_1 Location: 16755-17007 bp Feature: domain Description: Phage_int_SAM_1 Location: 16755-17007 bp Feature: gene Location: 17065-17235 bp Feature: domain Description: INT_RitB_C_like Location: 17074-17167 bp Feature: domain Description: INT_RitB_C_like Location: 17074-17167 bp Feature: gene Location: 18228-18476 bp Feature: gene Location: 18647-19306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18650-18857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18 650-18 8 57 bp Feature: domain Description: GIIM Note: maturase Location: 18911-19130 bp Feature: domain Description: GIIM Note: maturase Location: 18 911-19130 bp Feature: gene Location: 19474-19809 bp Feature: domain Description: PHA02517 Location: 19489-19807 bp Feature: domain Description: PHA02517 Location: 1948 9-198 07 bp Feature: gene Location: 19867-20259 bp Feature: domain Description: HTH_21 Location: 19993-20152 bp Feature: domain Description: HTH_21 Location: 19993-20152 bp Feature: gene Location: 111973-112110 bp Feature: gene Location: 112346-112537 bp Feature: gene Location: 112863-113108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112869-113103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1128 69-113103 bp Feature: gene Location: 113813-114241 bp Feature: domain Description: YhcG Location: 113873-114209 bp Feature: domain Description: YhcG Location: 1138 73-114209 bp Feature: gene Location: 114214-114597 bp Feature: domain Description: YhcG_C Location: 114217-114538 bp Feature: domain Description: YhcG_C Location: 114217-114538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BglG (COG3711), PTS_EIIA_2 (pfam00359), RVT-GII, INT_RitC_C_like (cd01182), Phage_int_SAM_1 (pfam02899), INT_RitB_C_like (cd00797), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_21 (pfam13276), YhcG (COG4804)
YhcG_C

Seq: CABKQO010000036.1 (1726 bp)
Overview 1 RT 1: 3-1473 bp Neighborhood of RT #1 [3, 1637] RVT-GII GIIM Feature: gene Location: 3-272 bp Feature: gene Location: 399-599 bp Feature: gene Location: 645-1637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 648-1182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 648-1182 bp Feature: domain Description: GIIM Note: maturase Location: 1245-1473 bp Feature: domain Description: GIIM Note: maturase Location: 1245-1473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CABKQO010000043.1 (1349 bp)
Overview 1 RT 1: 7-1050 bp Neighborhood of RT #1 [7, 1050] RVT-GII Feature: gene Location: 7-603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340-577 bp Feature: gene Location: 802-1050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CABKQO010000005.1 (313771 bp)
Overview 1 RT 1: 117236-121543 bp 2 RT 2: 224194-227028 bp Neighborhood of RT #1 [117236, 121543] VirD4 KOG4768 RVT-GII Neighborhood of RT #2 [224194, 227039] DUF3837 RVT-GII GIIM HMA Feature: gene Location: 117236-118558 bp Feature: domain Description: VirD4 Location: 117260-118409 bp Feature: domain Description: VirD4 Location: 11 7260-11 8409 bp Feature: gene Location: 118667-119377 bp Feature: domain Description: KOG4768 Location: 118733-119366 bp Feature: domain Description: KOG4768 Location: 11 8733-11 9366 bp Feature: gene Location: 119392-120483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119656-120433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11 9656-120433 bp Feature: gene Location: 120770-120910 bp Feature: gene Location: 121043-121543 bp Feature: gene Location: 224194-224502 bp Feature: domain Description: DUF3837 Location: 224200-224497 bp Feature: domain Description: DUF3837 Location: 224200-224497 bp Feature: gene Location: 224704-224949 bp Feature: gene Location: 225183-225740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225186-225285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225186-225285 bp Feature: domain Description: GIIM Note: maturase Location: 225348-225576 bp Feature: domain Description: GIIM Note: maturase Location: 225348-225576 bp Feature: gene Location: 226116-226649 bp Feature: gene Location: 226839-227039 bp Feature: domain Description: HMA Location: 226857-227028 bp Feature: domain Description: HMA Location: 226857-227028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, DUF3837 (pfam12939), GIIM (pfam08388), HMA (pfam00403)

Seq: CABKQO010000052.1 (777 bp)
Overview 1 RT 1: 1-769 bp Neighborhood of RT #1 [1, 774] RVT-GII Feature: gene Location: 1-774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163-769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163-769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII