myRT

myRT report for GCA_902375105.1_MGYG-HGUT-01452

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Seq: CABKSS010000001.1 (428573 bp)
Overview 1 RT 1: 380016-387928 bp Neighborhood of RT #1 [380016, 387954] Nudix_Hydrolase_8 NarQ NarQ GGDEF RVT-GII FtsX FtsX Feature: gene Location: 380016-380471 bp Feature: domain Description: Nudix_Hydrolase_8 Location: 380070-380415 bp Feature: domain Description: Nudix_Hydrolase_8 Location: 380070-38041 5 bp Feature: gene Location: 380502-382445 bp Feature: domain Description: NarQ Location: 380544-381039 bp Feature: domain Description: NarQ Location: 380544-381 039 bp Feature: domain Description: NarQ Location: 381453-381699 bp Feature: domain Description: NarQ Location: 381 453-381 699 bp Feature: domain Description: GGDEF Location: 381987-382404 bp Feature: domain Description: GGDEF Location: 381 987-382404 bp Feature: gene Location: 383037-383381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383046-383292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383046-383292 bp Feature: gene Location: 384105-384740 bp Feature: gene Location: 385030-387954 bp Feature: domain Description: FtsX Location: 386230-386497 bp Feature: domain Description: FtsX Location: 386230-386497 bp Feature: domain Description: FtsX Location: 387676-387928 bp Feature: domain Description: FtsX Location: 387676-387928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nudix_Hydrolase_8 (cd04665), NarQ (COG3850), GGDEF (TIGR00254), RVT-GII, FtsX (pfam02687)

Seq: CABKSS010000004.1 (360722 bp)
Overview 1 RT 1: 344608-352632 bp Neighborhood of RT #1 [344608, 352632] TpcC RVT-GII KOG4768 HNHc Feature: gene Location: 344608-344763 bp Feature: gene Location: 345866-346762 bp Feature: domain Description: TpcC Location: 346082-346754 bp Feature: domain Description: TpcC Location: 346082 -346754 bp Feature: gene Location: 346950-348779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347262-347955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3472 62 -347955 bp Feature: domain Description: KOG4768 Location: 348057-348285 bp Feature: domain Description: KOG4768 Location: 348057-3482 85 bp Feature: domain Description: HNHc Note: nucleases Location: 348489-348651 bp Feature: domain Description: HNHc Note: nucleases Location: 348489-348651 bp Feature: gene Location: 349621-349800 bp Feature: gene Location: 350446-352632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TpcC (pfam12642), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), HNHc (smart00507)

Seq: CABKSS010000011.1 (106591 bp)
Overview 1 RT 1: 26067-33672 bp 2 RT 2: 96504-103109 bp Neighborhood of RT #1 [26067, 33672] T4SS-DNA_transf RVT-GII Intron_maturas2 VirD4 RVT-GII KOG4768 DUF5083 T4SS-DNA_transf Neighborhood of RT #2 [96504, 103549] GGDEF DUF3796 RVT-GII UvrD UvrD YbjD Feature: gene Location: 26067-26369 bp Feature: gene Location: 26481-27008 bp Feature: domain Description: T4SS-DNA_transf Location: 26583-26817 bp Feature: domain Description: T4SS-DNA_transf Location: 26583 -26817 bp Feature: gene Location: 27032-28849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27296-28130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27296-2813 0 bp Feature: domain Description: Intron_maturas2 Location: 28211-28523 bp Feature: domain Description: Intron_maturas2 Location: 28211-28523 bp Feature: gene Location: 29456-30310 bp Feature: domain Description: VirD4 Location: 29477-30299 bp Feature: domain Description: VirD4 Location: 29477-3 0299 bp Feature: gene Location: 30427-32196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30685-31390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0685-3 13 90 bp Feature: domain Description: KOG4768 Location: 31489-31636 bp Feature: domain Description: KOG4768 Location: 3 1489-3 163 6 bp Feature: gene Location: 32928-33473 bp Feature: domain Description: DUF5083 Location: 32952-33183 bp Feature: domain Description: DUF5083 Location: 3 2952-3 3 183 bp Feature: domain Description: T4SS-DNA_transf Location: 33207-33426 bp Feature: domain Description: T4SS-DNA_transf Location: 3 3 207-3 3 426 bp Feature: gene Location: 33460-33672 bp Feature: gene Location: 96504-97880 bp Feature: domain Description: GGDEF Location: 97383-97854 bp Feature: domain Description: GGDEF Location: 973 83 -97854 bp Feature: gene Location: 98049-98426 bp Feature: domain Description: DUF3796 Location: 98076-98388 bp Feature: domain Description: DUF3 796 Location: 98076-983 88 bp Feature: gene Location: 98844-99470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99045-99426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99045-99426 bp Feature: gene Location: 100411-102222 bp Feature: domain Description: UvrD Location: 100477-101536 bp Feature: domain Description: UvrD Location: 100477-10153 6 bp Feature: domain Description: UvrD Location: 101557-102208 bp Feature: domain Description: UvrD Location: 101557-102208 bp Feature: gene Location: 102224-103549 bp Feature: domain Description: YbjD Location: 102554-103109 bp Feature: domain Description: YbjD Location: 102554-103 109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, Intron_maturas2 (pfam01348), VirD4 (COG3505), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), DUF5083 (pfam16890), GGDEF (TIGR00254), DUF3796 (pfam12676), UvrD (COG0210), YbjD (COG3593)

Seq: CABKSS010000002.1 (373892 bp)
Overview 1 RT 1: 341607-346152 bp Neighborhood of RT #1 [341607, 346152] ABC2_membrane CcmA RVT-Retrons PucR PucR Feature: gene Location: 341607-342350 bp Feature: domain Description: ABC2_membrane Location: 341631-342240 bp Feature: domain Description: ABC2_membrane Location: 34 1631-34 224 0 bp Feature: gene Location: 342353-343291 bp Feature: domain Description: CcmA Location: 342356-343274 bp Feature: domain Description: CcmA Location: 34 2356-34 3274 bp Feature: gene Location: 343549-344517 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 343696-344251 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34 3696-34 4 251 bp Feature: gene Location: 344704-345867 bp Feature: domain Description: PucR Location: 344746-345070 bp Feature: domain Description: PucR Location: 34 4 74 6-34 5070 bp Feature: domain Description: PucR Location: 345406-345850 bp Feature: domain Description: PucR Location: 34 54 06-34 5850 bp Feature: gene Location: 346024-346152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC2_membrane (pfam01061), CcmA (COG4133), RVT-Retrons, PucR (pfam07905)

Seq: CABKSS010000023.1 (2599 bp)
Overview 1 RT 1: 470-2267 bp Neighborhood of RT #1 [470, 2275] Y2_Tnp Zn_Tnp_IS91 RVT-GII group_II_RT_mat Feature: gene Location: 470-1150 bp Feature: domain Description: Y2_Tnp Location: 716-1061 bp Feature: domain Description: Y2_Tnp Location: 716-1061 bp Feature: gene Location: 1184-1465 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1307-1460 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1307-1460 bp Feature: gene Location: 1742-1954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1748-1928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1748-1928 bp Feature: gene Location: 1979-2275 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1985-2267 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1985 -2267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y2_Tnp (pfam04986), Zn_Tnp_IS91 (pfam14319), RVT-GII, group_II_RT_mat (TIGR04416)