myRT

myRT report for GCA_902375545.1_MGYG-HGUT-01493

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Seq: CABKUK010000006.1 (333146 bp)
Overview 1 RT 1: 106667-112693 bp 2 RT 2: 181120-190916 bp 3 RT 3: 235894-241387 bp Neighborhood of RT #1 [106667, 112893] RVT-GII GIIM Phage_int_SAM_3 INT_ICEBs1_C_like Neighborhood of RT #2 [181120, 190916] DUF3851 TraC-F-type RVT-GII HNHc IME4 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [235894, 241387] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc Feature: gene Location: 106667-107383 bp Feature: gene Location: 107686-108774 bp Feature: gene Location: 109004-110284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109214-109829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0921 4-1 09829 bp Feature: domain Description: GIIM Note: maturase Location: 109892-110111 bp Feature: domain Description: GIIM Note: maturase Location: 1 09892-1 1 01 1 1 bp Feature: gene Location: 110431-110742 bp Feature: gene Location: 111511-112893 bp Feature: domain Description: Phage_int_SAM_3 Location: 111691-111862 bp Feature: domain Description: Phage_int_SAM_3 Location: 1 1 1 691 -1 1 1 862 bp Feature: domain Description: INT_ICEBs1_C_like Location: 112063-112693 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 1 2063-1 1 2693 bp Feature: gene Location: 181120-181494 bp Feature: domain Description: DUF3851 Location: 181123-181492 bp Feature: domain Description: DUF3851 Location: 1 81 1 23-1 81 492 bp Feature: gene Location: 181497-182864 bp Feature: domain Description: TraC-F-type Location: 181521-182664 bp Feature: domain Description: TraC-F-type Location: 1 81 521 -1 82664 bp Feature: gene Location: 183030-185003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183366-184104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 83366-1 841 04 bp Feature: domain Description: HNHc Note: nucleases Location: 184659-184797 bp Feature: domain Description: HNHc Note: nucleases Location: 1 84659-1 84797 bp Feature: gene Location: 185726-186766 bp Feature: gene Location: 186897-187085 bp Feature: gene Location: 187127-187672 bp Feature: domain Description: IME4 Location: 187136-187655 bp Feature: domain Description: IME4 Location: 1 871 36-1 87655 bp Feature: gene Location: 187687-187989 bp Feature: gene Location: 188065-189897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188329-189160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 88329-1 891 60 bp Feature: domain Description: Intron_maturas2 Location: 189232-189547 bp Feature: domain Description: Intron_maturas2 Location: 1 89232-1 89547 bp Feature: domain Description: HNHc Note: nucleases Location: 189694-189868 bp Feature: domain Description: HNHc Note: nucleases Location: 1 89694-1 89868 bp Feature: gene Location: 190143-190358 bp Feature: gene Location: 190473-190916 bp Feature: gene Location: 235894-237774 bp Feature: domain Description: SR_TndX_transposase Location: 235918-236326 bp Feature: domain Description: SR_TndX_transposase Location: 23591 8-236326 bp Feature: domain Description: Recombinase Location: 236425-236788 bp Feature: domain Description: Recombinase Location: 236425-236788 bp Feature: domain Description: Zn_ribbon_recom Location: 236830-237013 bp Feature: domain Description: Zn_ribbon_recom Location: 236830-23701 3 bp Feature: domain Description: DUF4368 Location: 237298-237484 bp Feature: domain Description: DUF4368 Location: 237298-237484 bp Feature: gene Location: 237847-238413 bp Feature: domain Description: T4SS-DNA_transf Location: 238018-238321 bp Feature: domain Description: T4SS-DNA_transf Location: 23801 8-238321 bp Feature: gene Location: 238504-240321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238768-239587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238768-239587 bp Feature: domain Description: Intron_maturas2 Location: 239659-239962 bp Feature: domain Description: Intron_maturas2 Location: 239659-239962 bp Feature: domain Description: HNHc Note: nucleases Location: 240142-240286 bp Feature: domain Description: HNHc Note: nucleases Location: 2401 42-240286 bp Feature: gene Location: 240608-240748 bp Feature: gene Location: 240881-241387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), DUF3851 (pfam12962), TraC-F-type (TIGR02746), HNHc (smart00507), IME4 (COG4725), Intron_maturas2 (pfam01348), SR_TndX_transposase (cd03770)
Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), T4SS-DNA_transf (pfam02534)

Seq: CABKUK010000001.1 (1727910 bp)
Overview 1 RT 1: 437858-441791 bp 2 RT 2: 684015-687740 bp Neighborhood of RT #1 [437858, 442246] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 FlgJ Neighborhood of RT #2 [684015, 687740] PerM DUF3837 RVT-GII GIIM Feature: gene Location: 437858-438952 bp Feature: domain Description: PHA00653 Location: 437951-438950 bp Feature: domain Description: PHA00653 Location: 437951-438950 bp Feature: gene Location: 439012-439401 bp Feature: domain Description: Avd_like Location: 439072-439375 bp Feature: domain Description: Avd_like Location: 439072 -439375 bp Feature: gene Location: 439759-440799 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 439969-440584 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 439969-440584 bp Feature: gene Location: 440870-441298 bp Feature: domain Description: Phage_holin_4_1 Location: 440924-441251 bp Feature: domain Description: Phage_holin_4_1 Location: 44092 4-4412 51 bp Feature: gene Location: 441302-442246 bp Feature: domain Description: FlgJ Location: 441320-441791 bp Feature: domain Description: FlgJ Location: 44132 0-441791 bp Feature: gene Location: 684015-685262 bp Feature: domain Description: PerM Location: 684132-685164 bp Feature: domain Description: PerM Location: 684132 -685164 bp Feature: gene Location: 685466-685774 bp Feature: domain Description: DUF3837 Location: 685472-685769 bp Feature: domain Description: DUF3837 Location: 685472 -685769 bp Feature: gene Location: 685912-686721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686038-686272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686038-6862 72 bp Feature: domain Description: GIIM Note: maturase Location: 686326-686554 bp Feature: domain Description: GIIM Note: maturase Location: 68632 6-686554 bp Feature: gene Location: 686730-687083 bp Feature: gene Location: 687153-687740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), FlgJ (COG1705), PerM (COG0628), DUF3837 (pfam12939), RVT-GII, GIIM (pfam08388)

Seq: CABKUK010000002.1 (1330539 bp)
Overview 1 RT 1: 345920-349736 bp 2 RT 2: 439066-442731 bp Neighborhood of RT #1 [345920, 349736] PBP2_TRAP_Siap HpcH RVT-GII GIIM Neighborhood of RT #2 [439066, 442751] DDE_5 RVT-GII GIIM RVT-GII MglA Feature: gene Location: 345920-347014 bp Feature: domain Description: PBP2_TRAP_Siap Location: 346100-347000 bp Feature: domain Description: PBP2_TRAP_Siap Location: 3 46100-3 47000 bp Feature: gene Location: 347029-347802 bp Feature: domain Description: HpcH Location: 347035-347785 bp Feature: domain Description: HpcH Location: 3 4703 5-3 47785 bp Feature: gene Location: 348032-349015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348209-348566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 48209-3 48566 bp Feature: domain Description: GIIM Note: maturase Location: 348620-348848 bp Feature: domain Description: GIIM Note: maturase Location: 3 48620-3 48848 bp Feature: gene Location: 349018-349209 bp Feature: gene Location: 349425-349736 bp Feature: gene Location: 439066-439698 bp Feature: domain Description: DDE_5 Location: 439222-439588 bp Feature: domain Description: DDE_5 Location: 43 9222-43 9588 bp Feature: gene Location: 439916-440053 bp Feature: gene Location: 440180-440644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440186-440276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440186-440276 bp Feature: domain Description: GIIM Note: maturase Location: 440336-440561 bp Feature: domain Description: GIIM Note: maturase Location: 4403 3 6-440561 bp Feature: gene Location: 440725-441222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441091-441166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441091-441166 bp Feature: gene Location: 441748-441957 bp Feature: gene Location: 441957-442751 bp Feature: domain Description: MglA Location: 441999-442731 bp Feature: domain Description: MglA Location: 441999-44273 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_TRAP_Siap (cd13672), HpcH (COG3836), RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546), MglA (COG1129)

Seq: CABKUK010000005.1 (597001 bp)
Overview 1 RT 1: 549824-553320 bp Neighborhood of RT #1 [549824, 553349] RpoE HipB RVT-GII ZupT MdlB Feature: gene Location: 549824-550276 bp Feature: domain Description: RpoE Location: 549866-550265 bp Feature: domain Description: RpoE Location: 54 9866-550265 bp Feature: gene Location: 550714-551064 bp Feature: domain Description: HipB Location: 550750-550987 bp Feature: domain Description: HipB Location: 550750-550987 bp Feature: gene Location: 551439-552017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551619-551958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551619-551958 bp Feature: gene Location: 552136-552903 bp Feature: domain Description: ZupT Location: 552154-552901 bp Feature: domain Description: ZupT Location: 552154 -552901 bp Feature: gene Location: 553017-553349 bp Feature: domain Description: MdlB Location: 553149-553320 bp Feature: domain Description: MdlB Location: 55314 9-553320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), HipB (COG1396), RVT-GII, ZupT (COG0428), MdlB (COG1132)

Seq: CABKUK010000009.1 (275112 bp)
Overview 1 RT 1: 10804-13877 bp Neighborhood of RT #1 [10804, 13877] spoVFB NAT_SF YoaP RVT-Retrons Feature: gene Location: 10804-11388 bp Feature: domain Description: spoVFB Location: 10807-11377 bp Feature: domain Description: spoVFB Location: 10807-11377 bp Feature: gene Location: 11691-12434 bp Feature: domain Description: NAT_SF Location: 11898-12015 bp Feature: domain Description: NAT_SF Location: 11898-12015 bp Feature: domain Description: YoaP Location: 12297-12423 bp Feature: domain Description: YoaP Location: 12297-12423 bp Feature: gene Location: 12446-13402 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12560-13115 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 125 60-13115 bp Feature: gene Location: 13208-13561 bp Feature: gene Location: 13674-13877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spoVFB (PRK08305), NAT_SF (cl17182), YoaP (pfam14268), RVT-Retrons

Seq: CABKUK010000028.1 (547 bp)
Overview 1 RT 1: 2-425 bp Neighborhood of RT #1 [2, 544] RVT-GII Feature: gene Location: 2-544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII