myRT

myRT report for GCA_902377405.1_MGYG-HGUT-01689

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Seq: CABLBP010000001.1 (605560 bp)
Overview 1 RT 1: 115025-119749 bp 2 RT 2: 378522-387431 bp 3 RT 3: 602631-605103 bp Neighborhood of RT #1 [115025, 119784] F420_ligase RVT-Retrons YfcE Neighborhood of RT #2 [378522, 387475] DUF3801 VirD4 VirD4 RVT-GII Intron_maturas2 TraG-D_C Maff2 RVT-GII HNHc Maff2 TrbL TrbL Neighborhood of RT #3 [602631, 605396] RVT-GII Intron_maturas2 Feature: gene Location: 115025-116272 bp Feature: domain Description: F420_ligase Location: 115103-116246 bp Feature: domain Description: F420_ligase Location: 1 1 51 03-1 1 6246 bp Feature: gene Location: 116383-116538 bp Feature: gene Location: 116612-117631 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 116777-117332 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 6777-1 1 7332 bp Feature: gene Location: 117691-118014 bp Feature: gene Location: 119302-119784 bp Feature: domain Description: YfcE Location: 119305-119749 bp Feature: domain Description: YfcE Location: 1 1 9305-1 1 9749 bp Feature: gene Location: 378522-378998 bp Feature: domain Description: DUF3801 Location: 378612-378891 bp Feature: domain Description: DUF3801 Location: 37861 2-378891 bp Feature: gene Location: 378995-380464 bp Feature: domain Description: VirD4 Location: 379223-379538 bp Feature: domain Description: VirD4 Location: 379223-379538 bp Feature: domain Description: VirD4 Location: 379637-380435 bp Feature: domain Description: VirD4 Location: 379637-380435 bp Feature: gene Location: 381058-382878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381331-382159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 331 -3821 59 bp Feature: domain Description: Intron_maturas2 Location: 382240-382540 bp Feature: domain Description: Intron_maturas2 Location: 382240-382540 bp Feature: gene Location: 382954-383400 bp Feature: domain Description: TraG-D_C Location: 383002-383179 bp Feature: domain Description: TraG-D_C Location: 383002-3831 79 bp Feature: gene Location: 383639-383770 bp Feature: domain Description: Maff2 Location: 383642-383768 bp Feature: domain Description: Maff2 Location: 383642-383768 bp Feature: gene Location: 384036-384227 bp Feature: gene Location: 384478-386352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384805-385543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384805-385543 bp Feature: domain Description: HNHc Note: nucleases Location: 386086-386239 bp Feature: domain Description: HNHc Note: nucleases Location: 386086-386239 bp Feature: gene Location: 386417-386605 bp Feature: domain Description: Maff2 Location: 386510-386600 bp Feature: domain Description: Maff2 Location: 38651 0-386600 bp Feature: gene Location: 386612-387475 bp Feature: domain Description: TrbL Location: 386636-386852 bp Feature: domain Description: TrbL Location: 386636-386852 bp Feature: domain Description: TrbL Location: 386909-387431 bp Feature: domain Description: TrbL Location: 386909-387431 bp Feature: gene Location: 602631-603035 bp Feature: gene Location: 603046-603300 bp Feature: gene Location: 603567-605396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603843-604677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603843-604677 bp Feature: domain Description: Intron_maturas2 Location: 604761-605103 bp Feature: domain Description: Intron_maturas2 Location: 604761 -6051 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CABLBP010000045.1 (17141 bp)
Overview 1 RT 1: 80-2727 bp 2 RT 2: 14896-17110 bp Neighborhood of RT #1 [80, 2765] RVT-GII GIIM RVT-GII Tra5 Neighborhood of RT #2 [14896, 17139] OmpR RVT-GII DDE_Tnp_IS66_C Feature: gene Location: 80-1324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 84-941 bp Feature: domain Description: GIIM Note: maturase Location: 1022-1238 bp Feature: domain Description: GIIM Note: maturase Location: 102 2 -12 38 bp Feature: gene Location: 1839-2249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1851-2220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1851-2 2 2 0 bp Feature: gene Location: 2262-2441 bp Feature: gene Location: 2460-2765 bp Feature: domain Description: Tra5 Location: 2469-2727 bp Feature: domain Description: Tra5 Location: 2 469-2 72 7 bp Feature: gene Location: 14896-15348 bp Feature: domain Description: OmpR Location: 14908-15106 bp Feature: domain Description: OmpR Location: 14908-15106 bp Feature: gene Location: 15617-16099 bp Feature: gene Location: 16207-16893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16477-16870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16477-16870 bp Feature: gene Location: 16972-17139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 16987-17110 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 16987-17110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CABLBP010000023.1 (93771 bp)
Overview 1 RT 1: 90880-93314 bp Neighborhood of RT #1 [90880, 93607] T4SS-DNA_transf RVT-GII Intron_maturas2 Feature: gene Location: 90880-91248 bp Feature: gene Location: 91257-91544 bp Feature: domain Description: T4SS-DNA_transf Location: 91263-91374 bp Feature: domain Description: T4SS-DNA_transf Location: 91263 -913 74 bp Feature: gene Location: 91778-93607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92054-92888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92054-92888 bp Feature: domain Description: Intron_maturas2 Location: 92972-93314 bp Feature: domain Description: Intron_maturas2 Location: 92972-93 3 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CABLBP010000002.1 (410563 bp)
Overview 1 RT 1: 408248-410560 bp Neighborhood of RT #1 [408248, 410560] RVT-GII GIIM Feature: gene Location: 408248-408400 bp Feature: gene Location: 408425-408700 bp Feature: gene Location: 408773-410017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408977-409634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 08977-4 09634 bp Feature: domain Description: GIIM Note: maturase Location: 409715-409931 bp Feature: domain Description: GIIM Note: maturase Location: 4 09715-4 09931 bp Feature: gene Location: 410360-410560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CABLBP010000024.1 (79701 bp)
Overview 1 RT 1: 1-3834 bp 2 RT 2: 58180-60985 bp Neighborhood of RT #1 [1, 3848] RVT-GII GIIM galactose_mutarotase_like Neighborhood of RT #2 [58180, 60985] Avd_like RVT-DGRs Feature: gene Location: 1-204 bp Feature: gene Location: 547-1791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751-1408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 1-1408 bp Feature: domain Description: GIIM Note: maturase Location: 1489-1705 bp Feature: domain Description: GIIM Note: maturase Location: 1489-1705 bp Feature: gene Location: 1916-2398 bp Feature: gene Location: 2763-3848 bp Feature: domain Description: galactose_mutarotase_like Location: 2844-3834 bp Feature: domain Description: galactose_mutarotase_like Location: 2844-3834 bp Feature: gene Location: 58180-58629 bp Feature: domain Description: Avd_like Location: 58246-58552 bp Feature: domain Description: Avd_like Location: 5 8246-5 85 5 2 bp Feature: gene Location: 58660-58989 bp Feature: gene Location: 59003-60166 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59210-59873 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 9210-5 9873 bp Feature: gene Location: 60289-60618 bp Feature: gene Location: 60746-60985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: CABLBP010000033.1 (39000 bp)
Overview 1 RT 1: 80-3751 bp Neighborhood of RT #1 [80, 3966] RVT-GII GIIM HDc PRK09344 Feature: gene Location: 80-1324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-941 bp Feature: domain Description: GIIM Note: maturase Location: 1022-1238 bp Feature: domain Description: GIIM Note: maturase Location: 1022-1238 bp Feature: gene Location: 1839-2111 bp Feature: domain Description: HDc Location: 1929-2067 bp Feature: domain Description: HDc Location: 1929-206 7 bp Feature: gene Location: 2275-3966 bp Feature: domain Description: PRK09344 Location: 2584-3751 bp Feature: domain Description: PRK09344 Location: 2584-3751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT