myRT

myRT report for GCA_902385105.1_UHGG_MGYG-HGUT-02267

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Seq: CABMEL010000076.1 (5442 bp)
Overview 1 RT 1: 2839-4715 bp Neighborhood of RT #1 [2839, 5029] RVT-UG2 Feature: gene Location: 2839-3045 bp Feature: gene Location: 3370-3564 bp Feature: gene Location: 3692-5029 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3875-4715 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3875-471 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: CABMEL010000031.1 (75020 bp)
Overview 1 RT 1: 6393-10977 bp Neighborhood of RT #1 [6393, 10982] Spr RVT-GII Intron_maturas2 DUF4315 Feature: gene Location: 6393-8096 bp Feature: domain Description: Spr Location: 7791-8064 bp Feature: domain Description: Spr Location: 7791-8064 bp Feature: gene Location: 8269-8457 bp Feature: gene Location: 8722-10518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8989-9802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8989-9802 bp Feature: domain Description: Intron_maturas2 Location: 9880-10300 bp Feature: domain Description: Intron_maturas2 Location: 9880-10300 bp Feature: gene Location: 10530-10664 bp Feature: gene Location: 10728-10982 bp Feature: domain Description: DUF4315 Location: 10743-10977 bp Feature: domain Description: DUF4315 Location: 10743-10977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), DUF4315 (pfam14193)

Seq: CABMEL010000001.1 (765831 bp)
Overview 1 RT 1: 307874-311799 bp 2 RT 2: 390039-392703 bp 3 RT 3: 399977-403261 bp Neighborhood of RT #1 [307874, 311799] YigB YigB RVT_N RVT-GII GIIM group_II_RT_mat Neighborhood of RT #2 [390039, 392720] Phage_XkdX RVT-DGRs Phage_holin_5_2 Neighborhood of RT #3 [399977, 403287] HTH_XRE RVT-Retrons HicA_toxin HicB Feature: gene Location: 307874-308491 bp Feature: domain Description: YigB Location: 307886-308060 bp Feature: domain Description: YigB Location: 3 07886-3 08060 bp Feature: domain Description: YigB Location: 308108-308462 bp Feature: domain Description: YigB Location: 3 08108-3 08462 bp Feature: gene Location: 308746-308895 bp Feature: gene Location: 309451-310914 bp Feature: domain Description: RVT_N Location: 309466-309709 bp Feature: domain Description: RVT_N Location: 3 09466-3 09709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309772-310411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 09772-3 10411 bp Feature: domain Description: GIIM Note: maturase Location: 310465-310696 bp Feature: domain Description: GIIM Note: maturase Location: 3 10465-3 10696 bp Feature: gene Location: 311065-311400 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 311209-311365 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 11209-3 113 65 bp Feature: gene Location: 311659-311799 bp Feature: gene Location: 390039-390182 bp Feature: domain Description: Phage_XkdX Location: 390060-390177 bp Feature: domain Description: Phage_XkdX Location: 3 90060-3 90177 bp Feature: gene Location: 390179-390664 bp Feature: gene Location: 390875-392071 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 391070-391787 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 91070-3 91787 bp Feature: gene Location: 392074-392412 bp Feature: gene Location: 392424-392720 bp Feature: domain Description: Phage_holin_5_2 Location: 392472-392703 bp Feature: domain Description: Phage_holin_5_2 Location: 3 92472-3 92703 bp Feature: gene Location: 399977-400189 bp Feature: domain Description: HTH_XRE Location: 399992-400151 bp Feature: domain Description: HTH_XRE Location: 3 99992-400151 bp Feature: gene Location: 400319-401191 bp Feature: gene Location: 401391-402512 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 401550-402114 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 401550-402114 bp Feature: gene Location: 402771-403076 bp Feature: domain Description: HicA_toxin Location: 402897-403038 bp Feature: domain Description: HicA_toxin Location: 402897-403 03 8 bp Feature: gene Location: 403078-403287 bp Feature: domain Description: HicB Location: 403081-403261 bp Feature: domain Description: HicB Location: 403 081-403 261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YigB (COG1011), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), Phage_XkdX (pfam09693), RVT-DGRs, Phage_holin_5_2 (pfam16079), HTH_XRE (smart00530), RVT-Retrons
HicA_toxin (pfam07927), HicB (pfam05534)

Seq: CABMEL010000020.1 (107409 bp)
Overview 1 RT 1: 40476-43492 bp Neighborhood of RT #1 [40476, 43533] Glyoxalase MPP_AQ1575 RVT-Retrons CheY Feature: gene Location: 40476-40913 bp Feature: domain Description: Glyoxalase Location: 40497-40857 bp Feature: domain Description: Glyoxalase Location: 4 04 97-4 0857 bp Feature: gene Location: 41038-41637 bp Feature: domain Description: MPP_AQ1575 Location: 41044-41431 bp Feature: domain Description: MPP_AQ1575 Location: 4 104 4 -4 14 31 bp Feature: gene Location: 41708-42694 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41876-42431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 1876-4 24 31 bp Feature: gene Location: 42884-43027 bp Feature: gene Location: 43081-43533 bp Feature: domain Description: CheY Location: 43135-43492 bp Feature: domain Description: CheY Location: 4 3135-4 34 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyoxalase (pfam00903), MPP_AQ1575 (cd07390), RVT-Retrons, CheY (COG0784)

Seq: CABMEL010000085.1 (1898 bp)
Overview 1 RT 1: 181-1657 bp Neighborhood of RT #1 [181, 1818] RVT-GII GIIM Feature: gene Location: 181-318 bp Feature: gene Location: 406-1818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 757-1378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 7-1378 bp Feature: domain Description: GIIM Note: maturase Location: 1429-1657 bp Feature: domain Description: GIIM Note: maturase Location: 1429-165 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)