myRT

myRT report for GCA_902385395.1_UHGG_MGYG-HGUT-02281

Download annotations/find similar RTs

Seq: CABMFH010000078.1 (2443 bp)
Overview 1 RT 1: 158-2441 bp Neighborhood of RT #1 [158, 2441] RVT_N RVT-GII GIIM Feature: gene Location: 158-367 bp Feature: gene Location: 649-2304 bp Feature: domain Description: RVT_N Location: 706-943 bp Feature: domain Description: RVT_N Location: 706-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994-1642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994-1 642 bp Feature: domain Description: GIIM Note: maturase Location: 1699-1930 bp Feature: domain Description: GIIM Note: maturase Location: 1 699-1 930 bp Feature: gene Location: 2307-2441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CABMFH010000065.1 (8234 bp)
Overview 1 RT 1: 2755-8223 bp Neighborhood of RT #1 [2755, 8231] DUF4141 DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 2755-3381 bp Feature: domain Description: DUF4141 Location: 2767-2920 bp Feature: domain Description: DUF4141 Location: 2 767-2 92 0 bp Feature: gene Location: 3381-3731 bp Feature: domain Description: DUF3876 Location: 3438-3705 bp Feature: domain Description: DUF3876 Location: 3438-3705 bp Feature: gene Location: 3975-5798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4239-5061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 39-5061 bp Feature: domain Description: Intron_maturas2 Location: 5235-5478 bp Feature: domain Description: Intron_maturas2 Location: 52 35-5478 bp Feature: domain Description: HNHc Note: nucleases Location: 5589-5760 bp Feature: domain Description: HNHc Note: nucleases Location: 5589-5760 bp Feature: gene Location: 6366-8231 bp Feature: domain Description: Bac_Flav_CT_G Location: 6369-8223 bp Feature: domain Description: Bac_Flav_CT_G Location: 6369-82 2 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), DUF3876 (pfam12992), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)

Seq: CABMFH010000015.1 (147969 bp)
Overview 1 RT 1: 142618-147943 bp Neighborhood of RT #1 [142618, 147966] YWFCY SXT_TraD TraG-D_C RVT-GII YkfC SMI1_KNR4 Feature: gene Location: 142618-144624 bp Feature: domain Description: YWFCY Location: 142624-142801 bp Feature: domain Description: YWFCY Location: 142624-142801 bp Feature: domain Description: SXT_TraD Location: 143224-143461 bp Feature: domain Description: SXT_TraD Location: 143 224-143 461 bp Feature: domain Description: TraG-D_C Location: 144001-144334 bp Feature: domain Description: TraG-D_C Location: 144001-1443 3 4 bp Feature: gene Location: 144730-145125 bp Feature: gene Location: 145556-146860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145751-146366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145751-1463 66 bp Feature: domain Description: YkfC Location: 146528-146645 bp Feature: domain Description: YkfC Location: 146528-146645 bp Feature: gene Location: 147466-147966 bp Feature: domain Description: SMI1_KNR4 Location: 147532-147943 bp Feature: domain Description: SMI1_KNR4 Location: 14753 2-147943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), SXT_TraD (TIGR03743), TraG-D_C (pfam12696), RVT-GII, YkfC (COG3344), SMI1_KNR4 (smart00860)

Seq: CABMFH010000009.1 (174965 bp)
Overview 1 RT 1: 140066-144022 bp Neighborhood of RT #1 [140066, 144069] DUF1566 Avd_like RVT-DGRs YD_repeat_2x YD_repeat_2x Feature: gene Location: 140066-140878 bp Feature: domain Description: DUF1566 Location: 140600-140852 bp Feature: domain Description: DUF1566 Location: 14 0600-14 0852 bp Feature: gene Location: 141024-141404 bp Feature: domain Description: Avd_like Location: 141051-141357 bp Feature: domain Description: Avd_like Location: 14 1051-14 1357 bp Feature: gene Location: 141419-142840 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 141791-142496 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14 1791-14 24 96 bp Feature: gene Location: 142806-143081 bp Feature: gene Location: 143359-144069 bp Feature: domain Description: YD_repeat_2x Location: 143785-143845 bp Feature: domain Description: YD_repeat_2x Location: 14 3785-14 384 5 bp Feature: domain Description: YD_repeat_2x Location: 143935-144022 bp Feature: domain Description: YD_repeat_2x Location: 14 3935-14 4 022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, YD_repeat_2x (TIGR01643)

Seq: CABMFH010000001.1 (509989 bp)
Overview 1 RT 1: 374279-382432 bp Neighborhood of RT #1 [374279, 382432] HTH_3 YhcG RVT-UG3 RVT-UG8 Mob_Pre KOG2911 Feature: gene Location: 374279-374497 bp Feature: domain Description: HTH_3 Location: 374345-374465 bp Feature: domain Description: HTH_3 Location: 374345 -374465 bp Feature: gene Location: 374490-375608 bp Feature: domain Description: YhcG Location: 374916-375396 bp Feature: domain Description: YhcG Location: 374916-375 396 bp Feature: gene Location: 375687-377111 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 376131-376650 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 376131-37665 0 bp Feature: gene Location: 377108-379300 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 377708-378158 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 377708-37815 8 bp Feature: gene Location: 379679-381226 bp Feature: domain Description: Mob_Pre Location: 380087-380369 bp Feature: domain Description: Mob_Pre Location: 380087-380369 bp Feature: domain Description: KOG2911 Location: 380495-380783 bp Feature: domain Description: KOG2911 Location: 380495 -380783 bp Feature: gene Location: 381383-382432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), YhcG (COG4804), RVT-UG3, RVT-UG8, Mob_Pre (pfam01076), KOG2911 (KOG2911, Uncharacterized conserved protein )

Seq: CABMFH010000012.1 (161534 bp)
Overview 1 RT 1: 38256-50957 bp Neighborhood of RT #1 [38256, 51073] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 38256-38765 bp Feature: gene Location: 39669-41855 bp Feature: gene Location: 42060-43193 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42384-42930 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42384-42930 bp Feature: gene Location: 43235-49108 bp Feature: domain Description: DUF4011 Location: 44399-44909 bp Feature: domain Description: DUF4011 Location: 44399-44909 bp Feature: domain Description: DEXXQc_SF1 Location: 45248-45857 bp Feature: domain Description: DEXXQc_SF1 Location: 45248-45857 bp Feature: domain Description: DEXXQc_SF1 Location: 46520-47435 bp Feature: domain Description: DEXXQc_SF1 Location: 46 520-47435 bp Feature: domain Description: KOG1803 Location: 47570-47948 bp Feature: domain Description: KOG1803 Location: 47570-47948 bp Feature: domain Description: MTES_1575 Location: 48107-48395 bp Feature: domain Description: MTES_1575 Location: 48107-48395 bp Feature: domain Description: DUF3320 Location: 48626-48746 bp Feature: domain Description: DUF3320 Location: 486 26 -48746 bp Feature: gene Location: 49277-51073 bp Feature: domain Description: rpsA Location: 49346-50957 bp Feature: domain Description: rpsA Location: 49346 -50957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: CABMFH010000005.1 (256809 bp)
Overview 1 RT 1: 200879-210341 bp Neighborhood of RT #1 [200879, 210341] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 200879-207616 bp Feature: domain Description: Laminin_G_3 Location: 202340-202418 bp Feature: domain Description: Laminin_G_3 Location: 202340-202418 bp Feature: domain Description: Laminin_G_3 Location: 203069-203495 bp Feature: domain Description: Laminin_G_3 Location: 203069-203495 bp Feature: gene Location: 207861-208016 bp Feature: gene Location: 208133-209437 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 208346-208940 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 208346-208940 bp Feature: gene Location: 209434-209919 bp Feature: gene Location: 210099-210341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: CABMFH010000002.1 (499857 bp)
Overview 1 RT 1: 89346-99565 bp 2 RT 2: 139294-142957 bp Neighborhood of RT #1 [89346, 99576] DUF1566 RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [139294, 142957] RVT-UG27 Feature: gene Location: 89346-91175 bp Feature: gene Location: 91238-91591 bp Feature: gene Location: 91582-93003 bp Feature: domain Description: DUF1566 Location: 91654-91798 bp Feature: domain Description: DUF1566 Location: 91654-91798 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 91987-92728 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9198 7-92728 bp Feature: gene Location: 93016-93417 bp Feature: domain Description: Avd_like Location: 93055-93394 bp Feature: domain Description: Avd_like Location: 93055-93394 bp Feature: gene Location: 93547-99576 bp Feature: domain Description: DUF1566 Location: 99262-99565 bp Feature: domain Description: DUF1566 Location: 99262-99565 bp Feature: gene Location: 139294-139896 bp Feature: gene Location: 139979-140209 bp Feature: gene Location: 140206-141474 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 140395-141031 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 140395-141031 bp Feature: gene Location: 141792-142004 bp Feature: gene Location: 142361-142957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), RVT-UG27

Seq: CABMFH010000004.1 (282780 bp)
Overview 1 RT 1: 275059-282562 bp Neighborhood of RT #1 [275059, 282603] SusD OMP_RagA_SusC RVT-GII Intron_maturas2 STN OMP_RagA_SusC Feature: gene Location: 275059-276744 bp Feature: domain Description: SusD Location: 275482-276580 bp Feature: domain Description: SusD Location: 275482-276580 bp Feature: gene Location: 276745-279084 bp Feature: domain Description: OMP_RagA_SusC Location: 276769-279079 bp Feature: domain Description: OMP_RagA_SusC Location: 276769 -279 079 bp Feature: gene Location: 279226-281037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279490-280312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279 49 0-280312 bp Feature: domain Description: Intron_maturas2 Location: 280387-280690 bp Feature: domain Description: Intron_maturas2 Location: 280387-28069 0 bp Feature: gene Location: 281274-281420 bp Feature: gene Location: 281554-282603 bp Feature: domain Description: STN Location: 281629-281716 bp Feature: domain Description: STN Location: 281629 -281716 bp Feature: domain Description: OMP_RagA_SusC Location: 281890-282562 bp Feature: domain Description: OMP_RagA_SusC Location: 28189 0-282562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD (NF033071), OMP_RagA_SusC (TIGR04056), RVT-GII, Intron_maturas2 (pfam01348), STN (smart00965)