myRT

myRT report for GCA_902388185.1_UHGG_MGYG-HGUT-02549

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Seq: CABMOQ010000006.1 (1058743 bp)
Overview 1 RT 1: 49522-55930 bp 2 RT 2: 982669-992838 bp Neighborhood of RT #1 [49522, 55930] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [982669, 992876] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 49522-49854 bp Feature: domain Description: DUF4133 Location: 49540-49807 bp Feature: domain Description: DUF41 33 Location: 49540-49807 bp Feature: gene Location: 49851-52247 bp Feature: domain Description: Bac_Flav_CT_G Location: 49854-52236 bp Feature: domain Description: Bac_Flav_CT_G Location: 49854-52236 bp Feature: gene Location: 52816-54639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53080-53902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53080-53902 bp Feature: domain Description: Intron_maturas2 Location: 54076-54319 bp Feature: domain Description: Intron_maturas2 Location: 54076-5431 9 bp Feature: domain Description: HNHc Note: nucleases Location: 54430-54601 bp Feature: domain Description: HNHc Note: nucleases Location: 54430-54601 bp Feature: gene Location: 54734-54862 bp Feature: gene Location: 54881-55930 bp Feature: gene Location: 982669-989457 bp Feature: domain Description: Laminin_G_3 Location: 985105-985486 bp Feature: domain Description: Laminin_G_3 Location: 9851 05-985486 bp Feature: domain Description: pfam08757 Location: 986281-986605 bp Feature: domain Description: pfam08757 Location: 986281 -986605 bp Feature: domain Description: LRR_AMN1 Location: 987217-987661 bp Feature: domain Description: LRR_AMN1 Location: 98721 7-987661 bp Feature: gene Location: 989518-989685 bp Feature: gene Location: 989830-991185 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 990106-990697 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9901 06-990697 bp Feature: gene Location: 991187-991681 bp Feature: gene Location: 991731-992876 bp Feature: domain Description: Arm-DNA-bind_5 Location: 991755-992001 bp Feature: domain Description: Arm-DNA-bind_5 Location: 991 755-992001 bp Feature: domain Description: Phage_int_SAM_5 Location: 992040-992325 bp Feature: domain Description: Phage_int_SAM_5 Location: 992040-992325 bp Feature: domain Description: INTN1_C_like Location: 992364-992838 bp Feature: domain Description: INTN1 _C_like Location: 992364-992838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293)
Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: CABMOQ010000008.1 (371660 bp)
Overview 1 RT 1: 66406-71595 bp 2 RT 2: 273576-276187 bp Neighborhood of RT #1 [66406, 71609] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Neighborhood of RT #2 [273576, 276187] RVT-GII GIIM RVT-GII Feature: gene Location: 66406-66720 bp Feature: domain Description: DUF3876 Location: 66460-66709 bp Feature: domain Description: DUF3876 Location: 66460-66709 bp Feature: gene Location: 66735-68429 bp Feature: domain Description: Bac_Flav_CT_G Location: 66855-68421 bp Feature: domain Description: Bac_Flav_CT_G Location: 66855-6842 1 bp Feature: gene Location: 68426-70135 bp Feature: domain Description: RVT_N Location: 68528-68771 bp Feature: domain Description: RVT_N Location: 6852 8-68771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68816-69464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68816-69464 bp Feature: domain Description: GIIM Note: maturase Location: 69518-69749 bp Feature: domain Description: GIIM Note: maturase Location: 69518-69749 bp Feature: gene Location: 70169-70549 bp Feature: gene Location: 70671-71609 bp Feature: domain Description: Bac_Flav_CT_G Location: 70674-71595 bp Feature: domain Description: Bac_Flav_CT_G Location: 70674-71595 bp Feature: gene Location: 273576-273782 bp Feature: gene Location: 273918-274175 bp Feature: gene Location: 274275-274793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274287-274527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 742 87-2 7452 7 bp Feature: domain Description: GIIM Note: maturase Location: 274539-274770 bp Feature: domain Description: GIIM Note: maturase Location: 2 74539-2 74770 bp Feature: gene Location: 274967-275455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275303-275441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 75303-2 75441 bp Feature: gene Location: 275745-275990 bp Feature: gene Location: 276059-276187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CABMOQ010000018.1 (666781 bp)
Overview 1 RT 1: 272776-277358 bp Neighborhood of RT #1 [272776, 277358] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII matK HNHc Feature: gene Location: 272776-273942 bp Feature: domain Description: Bac_Flav_CT_G Location: 272782-273940 bp Feature: domain Description: Bac_Flav_CT_G Location: 272782-273 940 bp Feature: gene Location: 273964-274314 bp Feature: domain Description: Bac_Flav_CT_G Location: 273967-274306 bp Feature: domain Description: Bac_Flav_CT_G Location: 273 967-2743 06 bp Feature: gene Location: 274883-276706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275147-275969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275147-275969 bp Feature: domain Description: matK Location: 276143-276371 bp Feature: domain Description: matK Location: 276143 -2763 71 bp Feature: domain Description: HNHc Note: nucleases Location: 276497-276668 bp Feature: domain Description: HNHc Note: nucleases Location: 276497-276668 bp Feature: gene Location: 276951-277082 bp Feature: gene Location: 277083-277358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, matK (CHL00002), HNHc (smart00507)

Seq: CABMOQ010000002.1 (74549 bp)
Overview 1 RT 1: 41488-46850 bp Neighborhood of RT #1 [41488, 46864] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 41488-42120 bp Feature: domain Description: DUF4141 Location: 41512-41659 bp Feature: domain Description: DUF4 14 1 Location: 4 1512-4 1659 bp Feature: gene Location: 42141-42599 bp Feature: domain Description: Bac_Flav_CT_G Location: 42159-42585 bp Feature: domain Description: Bac_Flav_CT_G Location: 4 2159-4 2585 bp Feature: gene Location: 42677-44488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42941-43763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 294 1-4 3763 bp Feature: domain Description: Intron_maturas2 Location: 43838-44153 bp Feature: domain Description: Intron_maturas2 Location: 4 3838-4 4 153 bp Feature: domain Description: HNHc Note: nucleases Location: 44309-44459 bp Feature: domain Description: HNHc Note: nucleases Location: 4 4 309-4 4 4 59 bp Feature: gene Location: 44834-45007 bp Feature: gene Location: 45035-46864 bp Feature: domain Description: Bac_Flav_CT_G Location: 45038-46850 bp Feature: domain Description: Bac_Flav_CT_G Location: 4 5038-4 6850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CABMOQ010000005.1 (558423 bp)
Overview 1 RT 1: 7127-9958 bp Neighborhood of RT #1 [7127, 9958] Mfa_like_1 DUF1566 HTH_28 RVT-GII Feature: gene Location: 7127-8407 bp Feature: domain Description: Mfa_like_1 Location: 7199-7610 bp Feature: domain Description: Mfa_like_1 Location: 7199-7610 bp Feature: domain Description: DUF1566 Location: 8096-8396 bp Feature: domain Description: DUF15 66 Location: 8096-8396 bp Feature: gene Location: 8745-9035 bp Feature: domain Description: HTH_28 Location: 8769-8913 bp Feature: domain Description: HTH_28 Location: 8769-8913 bp Feature: gene Location: 9156-9353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9159-9351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915 9-935 1 bp Feature: gene Location: 9383-9592 bp Feature: gene Location: 9596-9958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfa_like_1 (pfam13149), DUF1566 (pfam07603), HTH_28 (pfam13518), RVT-GII