myRT

myRT report for GCA_902497365.1_P9238

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Seq: LR700000.1 (2851 bp)
Overview 1 RT 1: 212-2849 bp Neighborhood of RT #1 [212, 2849] RVT-GII HNHc Feature: gene Location: 212-2128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536-1250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536-1 250 bp Feature: domain Description: HNHc Note: nucleases Location: 1880-2051 bp Feature: domain Description: HNHc Note: nucleases Location: 1 880-2051 bp Feature: gene Location: 2562-2849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: LR699963.1 (484857 bp)
Overview 1 RT 1: 156817-159329 bp Neighborhood of RT #1 [156817, 159329] Phage_XkdX RVT-DGRs RVT-DGRs Feature: gene Location: 156817-156966 bp Feature: domain Description: Phage_XkdX Location: 156841-156958 bp Feature: domain Description: Phage_XkdX Location: 156841-156958 bp Feature: gene Location: 156968-157330 bp Feature: gene Location: 157267-157839 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 157279-157513 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1572 79-157513 bp Feature: gene Location: 157851-158498 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 158034-158334 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 158034-158334 bp Feature: gene Location: 158630-158947 bp Feature: gene Location: 158784-159329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs

Seq: LR699966.1 (280427 bp)
Overview 1 RT 1: 71144-76836 bp Neighborhood of RT #1 [71144, 76836] Eco57I HTH_XRE RVT-UG2 CxxCG_CxxCG_HTH GepA Feature: gene Location: 71144-73180 bp Feature: domain Description: Eco57I Location: 72128-72419 bp Feature: domain Description: Eco57I Location: 72128-72419 bp Feature: gene Location: 73354-73656 bp Feature: domain Description: HTH_XRE Location: 73363-73534 bp Feature: domain Description: HTH_XRE Location: 73 3 63 -73 53 4 bp Feature: gene Location: 73715-74944 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 73826-74657 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 73 826-74657 bp Feature: gene Location: 75427-76422 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 75451-75826 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 75451-75826 bp Feature: domain Description: GepA Location: 75964-76351 bp Feature: domain Description: GepA Location: 75964-763 51 bp Feature: gene Location: 76450-76836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Eco57I (pfam07669), HTH_XRE (smart00530), RVT-UG2, CxxCG_CxxCG_HTH (TIGR03830), GepA (COG3600)

Seq: LR699967.1 (195598 bp)
Overview 1 RT 1: 159811-165774 bp Neighborhood of RT #1 [159811, 165881] Cyt_C5_DNA_methylase TraC-F-type RVT_N RVT-GII GIIM VirB4_CagE VirB4_CagE AAA_10 PrgI Feature: gene Location: 159811-160797 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 159829-160318 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 159829-160318 bp Feature: gene Location: 160794-162014 bp Feature: domain Description: TraC-F-type Location: 161097-161877 bp Feature: domain Description: TraC-F-type Location: 161097-161877 bp Feature: gene Location: 161800-163479 bp Feature: domain Description: RVT_N Location: 161878-162118 bp Feature: domain Description: RVT_N Location: 161878-162118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162166-162826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162166-162826 bp Feature: domain Description: GIIM Note: maturase Location: 162880-163114 bp Feature: domain Description: GIIM Note: maturase Location: 162880-163114 bp Feature: gene Location: 164015-165529 bp Feature: domain Description: VirB4_CagE Location: 164138-164570 bp Feature: domain Description: VirB4 _CagE Location: 164 138-164 570 bp Feature: domain Description: VirB4_CagE Location: 164804-165302 bp Feature: domain Description: VirB4 _CagE Location: 164 804 -165302 bp Feature: domain Description: AAA_10 Location: 165371-165515 bp Feature: domain Description: AAA_10 Location: 165371-165515 bp Feature: gene Location: 165486-165881 bp Feature: domain Description: PrgI Location: 165501-165774 bp Feature: domain Description: PrgI Location: 165501-165774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cyt_C5_DNA_methylase (cl30459), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirB4_CagE (TIGR00929), AAA_10 (pfam12846), PrgI (pfam12666)