myRT

myRT report for GCA_902497515.1_Bazo_LS_SOXsym_bin

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Seq: CABVGM010000336.1 (1606 bp)
Overview 1 RT 1: 1-1605 bp Neighborhood of RT #1 [1, 1604] Fib_succ_major RVT-DGRs HTH_38 Feature: gene Location: 1-771 bp Feature: domain Description: Fib_succ_major Location: 226-763 bp Feature: domain Description: Fib_succ_major Location: 226-763 bp Feature: gene Location: 900-1415 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1107-1401 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 07-1 401 bp Feature: gene Location: 1470-1604 bp Feature: domain Description: HTH_38 Location: 1479-1605 bp Feature: domain Description: HTH_38 Location: 1 479-1 605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Fib_succ_major (TIGR02145), RVT-DGRs, HTH_38 (pfam13936)

Seq: CABVGM010000019.1 (1606 bp)
Overview 1 RT 1: 3-1595 bp Neighborhood of RT #1 [3, 1603] HTH_38 RVT-DGRs Fib_succ_major Feature: gene Location: 3-137 bp Feature: domain Description: HTH_38 Location: 12-138 bp Feature: domain Description: HTH_38 Location: 12 -138 bp Feature: gene Location: 192-707 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 399-693 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 399-693 bp Feature: gene Location: 836-1603 bp Feature: domain Description: Fib_succ_major Location: 1058-1595 bp Feature: domain Description: Fib_succ_major Location: 1058-1595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), RVT-DGRs, Fib_succ_major (TIGR02145)

Seq: CABVGM010000588.1 (1950 bp)
Overview 1 RT 1: 2-956 bp Neighborhood of RT #1 [2, 1141] IS285 RVT-Retrons Feature: gene Location: 2-208 bp Feature: domain Description: IS285 Location: 5-197 bp Feature: domain Description: IS285 Location: 5-197 bp Feature: gene Location: 254-1141 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 395-956 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 95-956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-Retrons

Seq: CABVGM010000176.1 (12272 bp)
Overview 1 RT 1: 2-4084 bp Neighborhood of RT #1 [2, 4095] IAT_beta Fib_succ_major RVT-DGRs RVT-DGRs Avd_like Feature: gene Location: 2-553 bp Feature: gene Location: 807-2636 bp Feature: domain Description: IAT_beta Location: 1182-1881 bp Feature: domain Description: IAT_beta Location: 1182-1881 bp Feature: domain Description: Fib_succ_major Location: 2073-2628 bp Feature: domain Description: Fib_succ_major Location: 2073-2628 bp Feature: gene Location: 2726-3265 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2933-3248 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2933-324 8 bp Feature: gene Location: 3427-3654 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3430-3604 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34 30-3604 bp Feature: gene Location: 3695-3904 bp Feature: gene Location: 3907-4095 bp Feature: domain Description: Avd_like Location: 3934-4084 bp Feature: domain Description: Avd_like Location: 3934 -4 084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IAT_beta (pfam11924), Fib_succ_major (TIGR02145), RVT-DGRs, Avd_like (cd16376)

Seq: CABVGM010000216.1 (3002 bp)
Overview 1 RT 1: 3-2151 bp Neighborhood of RT #1 [3, 2618] GIY-YIG_PLEs RVT-UG10 Feature: gene Location: 3-2618 bp Feature: domain Description: GIY-YIG_PLEs Location: 15-240 bp Feature: domain Description: GIY-YIG_PLEs Location: 15 -240 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 1911-2151 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 1911-215 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIY-YIG_PLEs (cd10442), RVT-UG10

Seq: CABVGM010000122.1 (4070 bp)
Overview 1 RT 1: 182-4049 bp Neighborhood of RT #1 [182, 4069] Virulence_RhuM RVT-UG15 RMtype1_S_LdeBORF1052P-TRD2-CR2 RMtype1_S_LdeBORF1052P-TRD2-CR2 Feature: gene Location: 182-1204 bp Feature: domain Description: Virulence_RhuM Location: 386-1145 bp Feature: domain Description: Virulence_RhuM Location: 386 -1145 bp Feature: gene Location: 1197-2786 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1644-2043 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 16 44-2043 bp Feature: gene Location: 2810-4069 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 3200-3464 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 3200-346 4 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 3488-4049 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 3488-4049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Virulence_RhuM (pfam13310), RVT-UG15, RMtype1_S_LdeBORF1052P-TRD2-CR2 (cd17278)

Seq: CABVGM010000369.1 (3868 bp)
Overview 1 RT 1: 346-3706 bp Neighborhood of RT #1 [346, 3732] PHA02517 RVT-GII GIIM HTH_21 InsE Feature: gene Location: 346-756 bp Feature: domain Description: PHA02517 Location: 349-745 bp Feature: domain Description: PHA02517 Location: 349-7 45 bp Feature: gene Location: 867-2393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-1872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-187 2 bp Feature: domain Description: GIIM Note: maturase Location: 1944-2169 bp Feature: domain Description: GIIM Note: maturase Location: 1944-2169 bp Feature: gene Location: 3024-3488 bp Feature: domain Description: HTH_21 Location: 3189-3348 bp Feature: domain Description: HTH_21 Location: 3189-3348 bp Feature: gene Location: 3445-3732 bp Feature: domain Description: InsE Location: 3451-3706 bp Feature: domain Description: InsE Location: 3451-37 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_21 (pfam13276), InsE (COG2963)

Seq: CABVGM010000420.1 (3265 bp)
Overview 1 RT 1: 298-3215 bp Neighborhood of RT #1 [298, 3262] RVT-AbiP2 Tra8 Feature: gene Location: 298-1908 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 715-1165 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 715-1165 bp Feature: gene Location: 1971-2855 bp Feature: gene Location: 2984-3262 bp Feature: domain Description: Tra8 Location: 2990-3215 bp Feature: domain Description: Tra8 Location: 2990-3215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, Tra8 (COG2826)

Seq: CABVGM010000247.1 (2288 bp)
Overview 1 RT 1: 1-2271 bp Neighborhood of RT #1 [1, 2285] Polbeta RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like RVT-UG15 Feature: gene Location: 1-1404 bp Feature: domain Description: Polbeta Location: 7-247 bp Feature: domain Description: Polbeta Location: 7-247 bp Feature: domain Description: RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like Location: 559-856 bp Feature: domain Description: RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like Location: 559 -856 bp Feature: domain Description: RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like Location: 904-1363 bp Feature: domain Description: RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like Location: 9 04-1363 bp Feature: gene Location: 1428-2285 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1875-2271 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1875-2271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Polbeta (pfam18765), RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like (cd17266), RVT-UG15