myRT

myRT report for GCA_902497915.1_PS710

Download annotations/find similar RTs

Seq: CABVHW010000007.1 Pseudomonas fluorescens isolate PS710 genome assembly, contig: PS710_7, whole genome shotgun sequence (285022 bp)
Overview 1 RT 1: 75572-80353 bp Neighborhood of RT #1 [75572, 80353] AraC_binding AraC RVT-GII GIIM COG3547 Feature: gene Location: 75572-76405 bp Feature: domain Description: AraC_binding Location: 75671-75995 bp Feature: domain Description: AraC_binding Location: 75671 -75995 bp Feature: domain Description: AraC Location: 76061-76400 bp Feature: domain Description: AraC Location: 76061 -76400 bp Feature: gene Location: 76741-77058 bp Feature: gene Location: 77256-78635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77601-78213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77601 -7821 3 bp Feature: domain Description: GIIM Note: maturase Location: 78273-78492 bp Feature: domain Description: GIIM Note: maturase Location: 78273-78492 bp Feature: gene Location: 79042-80013 bp Feature: domain Description: COG3547 Location: 79057-79831 bp Feature: domain Description: COG3547 Location: 79057-79831 bp Feature: gene Location: 80159-80353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC_binding (pfam02311), AraC (COG2207), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: CABVHW010000021.1 Pseudomonas fluorescens isolate PS710 genome assembly, contig: PS710_21, whole genome shotgun sequence (121242 bp)
Overview 1 RT 1: 116984-121013 bp Neighborhood of RT #1 [116984, 121156] gcw_chp SLC-NCS1sbd_CobB-like RVT-GII GIIM Feature: gene Location: 116984-117724 bp Feature: domain Description: gcw_chp Location: 116987-117722 bp Feature: domain Description: gcw_chp Location: 116987-11772 2 bp Feature: gene Location: 117942-119345 bp Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 118011-119316 bp Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 118011-119316 bp Feature: gene Location: 119789-121156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120122-120734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 012 2 -12 0734 bp Feature: domain Description: GIIM Note: maturase Location: 120794-121013 bp Feature: domain Description: GIIM Note: maturase Location: 12 0794-12 1013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gcw_chp (TIGR02001), SLC-NCS1sbd_CobB-like (cd11484), RVT-GII, GIIM (pfam08388)

Seq: CABVHW010000023.1 Pseudomonas fluorescens isolate PS710 genome assembly, contig: PS710_23, whole genome shotgun sequence (117271 bp)
Overview 1 RT 1: 9688-17313 bp Neighborhood of RT #1 [9688, 17756] Dcm RVT-UG28 Mob_Pre Phage_GPA Feature: gene Location: 9688-10752 bp Feature: domain Description: Dcm Location: 9691-10672 bp Feature: domain Description: Dcm Location: 9691-10672 bp Feature: gene Location: 11118-11810 bp Feature: gene Location: 12263-13762 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 12548-13184 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 12548-13 184 bp Feature: gene Location: 14587-15603 bp Feature: domain Description: Mob_Pre Location: 14593-15151 bp Feature: domain Description: Mob_Pre Location: 14593 -15151 bp Feature: gene Location: 16212-17756 bp Feature: domain Description: Phage_GPA Location: 16539-17313 bp Feature: domain Description: Phage_GPA Location: 1653 9-173 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-UG28, Mob_Pre (pfam01076), Phage_GPA (pfam05840)

Seq: CABVHW010000035.1 Pseudomonas fluorescens isolate PS710 genome assembly, contig: PS710_35, whole genome shotgun sequence (46001 bp)
Overview 1 RT 1: 41064-45772 bp Neighborhood of RT #1 [41064, 45915] CoxL CoxS RVT-GII GIIM Feature: gene Location: 41064-43232 bp Feature: domain Description: CoxL Location: 41154-43221 bp Feature: domain Description: CoxL Location: 4 1154 -4 3221 bp Feature: gene Location: 43258-43713 bp Feature: domain Description: CoxS Location: 43264-43705 bp Feature: domain Description: CoxS Location: 4 3264 -4 3705 bp Feature: gene Location: 44548-45915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44881-45493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 881-4 54 93 bp Feature: domain Description: GIIM Note: maturase Location: 45553-45772 bp Feature: domain Description: GIIM Note: maturase Location: 4 5553-4 5772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoxL (COG1529), CoxS (COG2080), RVT-GII, GIIM (pfam08388)

Seq: CABVHW010000058.1 Pseudomonas fluorescens isolate PS710 genome assembly, contig: PS710_58, whole genome shotgun sequence (10683 bp)
Overview 1 RT 1: 379-2609 bp Neighborhood of RT #1 [379, 2659] RVT-GII GIIM Acetyltransf_1 Feature: gene Location: 379-1746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712-1324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712-1324 bp Feature: domain Description: GIIM Note: maturase Location: 1384-1603 bp Feature: domain Description: GIIM Note: maturase Location: 1384-1603 bp Feature: gene Location: 1788-2054 bp Feature: gene Location: 2201-2659 bp Feature: domain Description: Acetyltransf_1 Location: 2321-2609 bp Feature: domain Description: Acetyltransf_1 Location: 2321-2609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Acetyltransf_1 (pfam00583)