myRT

myRT report for GCA_902498045.1_PS843

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Seq: CABVIO010000001.1 (997764 bp)
Overview 1 RT 1: 503275-508229 bp 2 RT 2: 539309-546604 bp 3 RT 3: 552819-556306 bp 4 RT 4: 586660-590826 bp Neighborhood of RT #1 [503275, 508285] IstB_IS21 COG4584 RVT-GII GIIM DDE_Tnp_1 DDE_Tnp_1 Neighborhood of RT #2 [539309, 546663] MvaT_DBD RVT-GII GIIM COG3547 RVT-GII OmpR cztS_silS_copS Neighborhood of RT #3 [552819, 556320] DDE_Tnp_Tn3 RVT-GII GIIM RVT_N RVT-GII PinE Neighborhood of RT #4 [586660, 590826] Pat_hypo_Ecoli_Z1214_like PHA02517 RVT_N RVT-GII GIIM HNH Feature: gene Location: 503275-504078 bp Feature: domain Description: IstB_IS21 Location: 503431-503959 bp Feature: domain Description: IstB_IS21 Location: 503431 -503959 bp Feature: gene Location: 504071-505357 bp Feature: domain Description: COG4584 Location: 504095-504680 bp Feature: domain Description: COG4584 Location: 504095-504680 bp Feature: gene Location: 505703-506995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505964-506576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505964-506576 bp Feature: domain Description: GIIM Note: maturase Location: 506633-506861 bp Feature: domain Description: GIIM Note: maturase Location: 506633-506861 bp Feature: gene Location: 507068-507997 bp Feature: domain Description: DDE_Tnp_1 Location: 507491-507773 bp Feature: domain Description: DDE_Tnp_1 Location: 507491 -507773 bp Feature: gene Location: 508061-508285 bp Feature: domain Description: DDE_Tnp_1 Location: 508100-508229 bp Feature: domain Description: DDE_Tnp_1 Location: 5081 00-508229 bp Feature: gene Location: 539309-539674 bp Feature: domain Description: MvaT_DBD Location: 539546-539666 bp Feature: domain Description: MvaT_DBD Location: 539546-539666 bp Feature: gene Location: 539819-539989 bp Feature: gene Location: 540205-541560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540496-541111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540496-541 1 1 1 bp Feature: domain Description: GIIM Note: maturase Location: 541165-541381 bp Feature: domain Description: GIIM Note: maturase Location: 541 1 65-541 381 bp Feature: gene Location: 541677-542714 bp Feature: domain Description: COG3547 Location: 541692-542658 bp Feature: domain Description: COG3547 Location: 541 692-542658 bp Feature: gene Location: 542830-542988 bp Feature: gene Location: 543814-544506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 544018-544474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54401 8-544474 bp Feature: gene Location: 544620-545300 bp Feature: domain Description: OmpR Location: 544629-545295 bp Feature: domain Description: OmpR Location: 544629-545295 bp Feature: gene Location: 545278-546663 bp Feature: domain Description: cztS_silS_copS Location: 545719-546604 bp Feature: domain Description: cztS_silS_copS Location: 54571 9-546604 bp Feature: gene Location: 552819-553835 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 552975-553764 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 552975-553764 bp Feature: gene Location: 554001-554750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554007-554271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554007-554271 bp Feature: domain Description: GIIM Note: maturase Location: 554322-554556 bp Feature: domain Description: GIIM Note: maturase Location: 554322-554556 bp Feature: gene Location: 554741-555484 bp Feature: domain Description: RVT_N Location: 554816-555056 bp Feature: domain Description: RVT_N Location: 55481 6-555056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555104-555476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5551 04-555476 bp Feature: gene Location: 555530-555712 bp Feature: gene Location: 556024-556320 bp Feature: domain Description: PinE Location: 556126-556306 bp Feature: domain Description: PinE Location: 5561 26-556306 bp Feature: gene Location: 586660-587532 bp Feature: domain Description: Pat_hypo_Ecoli_Z1214_like Location: 586693-587257 bp Feature: domain Description: Pat_hypo_Ecoli_Z1 21 4_like Location: 586693-587257 bp Feature: gene Location: 587597-587872 bp Feature: domain Description: PHA02517 Location: 587606-587801 bp Feature: domain Description: PHA0251 7 Location: 587606-587801 bp Feature: gene Location: 588050-589717 bp Feature: domain Description: RVT_N Location: 588095-588338 bp Feature: domain Description: RVT_N Location: 588095-588338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 588383-589028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 588383-589028 bp Feature: domain Description: GIIM Note: maturase Location: 589079-589313 bp Feature: domain Description: GIIM Note: maturase Location: 589079-58931 3 bp Feature: domain Description: HNH Note: nucleases Location: 589565-589700 bp Feature: domain Description: HNH Note: nucleases Location: 589565-589700 bp Feature: gene Location: 590158-590433 bp Feature: gene Location: 590605-590826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), COG4584 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), MvaT_DBD (cl40688), COG3547 (Transposase ), OmpR (COG0745), cztS_silS_copS (TIGR01386), DDE_Tnp_Tn3 (pfam01526)
RVT_N (pfam13655), PinE (COG1961), Pat_hypo_Ecoli_Z1214_like (cd07209), PHA02517 (putative transposase OrfB; Reviewed), HNH (pfam01844)

Seq: CABVIO010000003.1 (628922 bp)
Overview 1 RT 1: 178494-181897 bp Neighborhood of RT #1 [178494, 181971] RVT-Retrons ComEC ComEC Feature: gene Location: 178494-178688 bp Feature: gene Location: 178820-179059 bp Feature: gene Location: 179135-180181 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 179270-179837 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1792 70-179837 bp Feature: gene Location: 180193-180423 bp Feature: gene Location: 180622-181971 bp Feature: domain Description: ComEC Location: 180835-180928 bp Feature: domain Description: ComEC Location: 180835-18092 8 bp Feature: domain Description: ComEC Location: 181759-181897 bp Feature: domain Description: ComEC Location: 181759-181897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ComEC (COG2333)

Seq: CABVIO010000006.1 (374112 bp)
Overview 1 RT 1: 79968-86380 bp Neighborhood of RT #1 [79968, 86394] TnpB_IS66 RVT-UG8 HTH_37 COG4683 Feature: gene Location: 79968-80792 bp Feature: gene Location: 81222-81599 bp Feature: domain Description: TnpB_IS66 Location: 81252-81471 bp Feature: domain Description: TnpB_IS66 Location: 81252-81471 bp Feature: gene Location: 82012-84060 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 82630-83080 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 8263 0-83 080 bp Feature: gene Location: 85731-86036 bp Feature: domain Description: HTH_37 Location: 85749-85989 bp Feature: domain Description: HTH_3 7 Location: 85749-85989 bp Feature: gene Location: 86029-86394 bp Feature: domain Description: COG4683 Location: 86035-86380 bp Feature: domain Description: COG4683 Location: 8603 5-863 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-UG8, HTH_37 (pfam13744), COG4683 (Uncharacterized protein )