myRT

myRT report for GCA_902498845.1_Genoma_RA15

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Seq: CABVLM010000006.1 (328874 bp)
Overview 1 RT 1: 224291-228070 bp 2 RT 2: 322891-328756 bp Neighborhood of RT #1 [224291, 228070] RpoE RVT-UG17 SLATT_5 Neighborhood of RT #2 [322891, 328872] HTH_17 SMC_N SbcC SMC_N RVT-UG5 DDE_3 Feature: gene Location: 224291-224842 bp Feature: domain Description: RpoE Location: 224360-224825 bp Feature: domain Description: RpoE Location: 224360-224825 bp Feature: gene Location: 224829-225443 bp Feature: gene Location: 225540-226730 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 225636-226218 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 225636-22621 8 bp Feature: gene Location: 226856-227440 bp Feature: domain Description: SLATT_5 Location: 226901-227432 bp Feature: domain Description: SLATT_5 Location: 226901 -227432 bp Feature: gene Location: 227939-228070 bp Feature: gene Location: 322891-323064 bp Feature: domain Description: HTH_17 Location: 322909-323053 bp Feature: domain Description: HTH_1 7 Location: 322909-323053 bp Feature: gene Location: 323074-325692 bp Feature: domain Description: SMC_N Location: 323320-323461 bp Feature: domain Description: SMC_N Location: 323320-323461 bp Feature: domain Description: SbcC Location: 323800-324310 bp Feature: domain Description: SbcC Location: 323800-32431 0 bp Feature: domain Description: SMC_N Location: 324571-325195 bp Feature: domain Description: SMC_N Location: 324571 -3251 95 bp Feature: gene Location: 325717-328467 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 326245-326740 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 326245-326740 bp Feature: gene Location: 328468-328872 bp Feature: domain Description: DDE_3 Location: 328477-328756 bp Feature: domain Description: DDE_3 Location: 328477-328756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), RVT-UG17, SLATT_5 (pfam18160), HTH_17 (pfam12728), SMC_N (pfam02463), SbcC (COG0419), RVT-UG5, DDE_3 (pfam13358)

Seq: CABVLM010000013.1 (153056 bp)
Overview 1 RT 1: 1-3901 bp Neighborhood of RT #1 [1, 4332] RVT-GII GIIM ParAB_family Feature: gene Location: 1-129 bp Feature: gene Location: 259-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 553-1177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 553-1177 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1435 bp Feature: domain Description: GIIM Note: maturase Location: 12 16-1435 bp Feature: gene Location: 1683-2492 bp Feature: gene Location: 3259-4332 bp Feature: domain Description: ParAB_family Location: 3271-3901 bp Feature: domain Description: ParAB_family Location: 32 71-3901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ParAB_family (cd02042)

Seq: CABVLM010000040.1 (1274 bp)
Overview 1 RT 1: 3-1014 bp Neighborhood of RT #1 [3, 1205] RVT-GII GIIM Feature: gene Location: 3-1205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144-768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144-768 bp Feature: domain Description: GIIM Note: maturase Location: 807-1014 bp Feature: domain Description: GIIM Note: maturase Location: 807-1014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CABVLM010000010.1 (208044 bp)
Overview 1 RT 1: 201815-206143 bp Neighborhood of RT #1 [201815, 206427] PRK10562 RVT-GII GIIM RAYT RAYT Feature: gene Location: 201815-202240 bp Feature: domain Description: PRK10562 Location: 201818-202229 bp Feature: domain Description: PRK10562 Location: 201818-202229 bp Feature: gene Location: 202219-202404 bp Feature: gene Location: 202927-204231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203221-203845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203221-20384 5 bp Feature: domain Description: GIIM Note: maturase Location: 203884-204103 bp Feature: domain Description: GIIM Note: maturase Location: 203884 -204 103 bp Feature: gene Location: 204402-205061 bp Feature: gene Location: 205540-206427 bp Feature: domain Description: RAYT Location: 205591-205789 bp Feature: domain Description: RAYT Location: 205591-205789 bp Feature: domain Description: RAYT Location: 205957-206143 bp Feature: domain Description: RAYT Location: 205957-20614 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10562 (putative acetyltransferase; Provisional), RVT-GII, GIIM (pfam08388), RAYT (COG1943)