myRT

myRT report for GCA_902499465.1_SB5917

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Seq: CABVMG010000066.1 (2063 bp)
Overview 1 RT 1: 3-1842 bp Neighborhood of RT #1 [3, 2054] RVT-GII Feature: gene Location: 3-206 bp Feature: gene Location: 837-2054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1110-1842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 0-1 842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CABVMG010000005.1 (324955 bp)
Overview 1 RT 1: 32103-38956 bp 2 RT 2: 127203-131518 bp Neighborhood of RT #1 [32103, 38973] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Neighborhood of RT #2 [127203, 131709] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 32103-32768 bp Feature: domain Description: INT_P4_C Location: 32208-32766 bp Feature: domain Description: INT_P4_C Location: 32 2 08-32 766 bp Feature: gene Location: 33029-33469 bp Feature: domain Description: Integrase_1 Location: 33035-33251 bp Feature: domain Description: Integrase_1 Location: 33035-332 51 bp Feature: gene Location: 33526-35604 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33934-34378 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33934-34378 bp Feature: gene Location: 35604-38213 bp Feature: domain Description: FimD Location: 35661-38202 bp Feature: domain Description: FimD Location: 35661-382 02 bp Feature: gene Location: 38245-38973 bp Feature: domain Description: FimC Location: 38278-38956 bp Feature: domain Description: FimC Location: 382 78-38956 bp Feature: gene Location: 127203-127346 bp Feature: gene Location: 127623-127781 bp Feature: gene Location: 128475-129407 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128577-129174 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 8577-12 9174 bp Feature: gene Location: 129404-131059 bp Feature: domain Description: COG3950 Location: 129605-131027 bp Feature: domain Description: COG3950 Location: 12 9605-13102 7 bp Feature: gene Location: 131062-131709 bp Feature: domain Description: TIGR02646 Location: 131131-131518 bp Feature: domain Description: TIGR02 646 Location: 131131-131518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: CABVMG010000067.1 (1914 bp)
Overview 1 RT 1: 60-1913 bp Neighborhood of RT #1 [60, 1913] RVT-GII Feature: gene Location: 60-1547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1155 bp Feature: gene Location: 1701-1913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CABVMG010000046.1 (11301 bp)
Overview 1 RT 1: 1835-4906 bp Neighborhood of RT #1 [1835, 4920] DDE_Tnp_ISL3 RVT-GII zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 AfaD-like Feature: gene Location: 1835-1969 bp Feature: gene Location: 2104-2466 bp Feature: gene Location: 2656-3336 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2662-2818 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2662-2818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3196-3334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3196-3334 bp Feature: gene Location: 3376-4353 bp Feature: domain Description: zf-ISL3 Location: 3508-3634 bp Feature: domain Description: zf-ISL3 Location: 3508-3634 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 3652-3799 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 3652-3799 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3850-4324 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3850-4 324 bp Feature: gene Location: 4471-4920 bp Feature: domain Description: AfaD-like Location: 4567-4906 bp Feature: domain Description: AfaD-like Location: 4 567-4 906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), RVT-GII, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), AfaD-like (cd18776)