myRT

myRT report for GCA_902500395.2_Burkholderia_contaminans_LMG_31806_assembly

Download annotations/find similar RTs

Seq: CABWIK020000119.1 (5294 bp)
Overview 1 RT 1: 1-2366 bp Neighborhood of RT #1 [1, 2366] Abi_C RVT-UG2 Feature: gene Location: 1-312 bp Feature: domain Description: Abi_C Location: 55-274 bp Feature: domain Description: Abi_C Location: 55-274 bp Feature: gene Location: 333-1604 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 531-1314 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 531 -1 31 4 bp Feature: gene Location: 1676-1969 bp Feature: gene Location: 2121-2366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Abi_C (pfam14355), RVT-UG2

Seq: CABWIK020000037.1 (78897 bp)
Overview 1 RT 1: 59485-66487 bp Neighborhood of RT #1 [59485, 66537] HpnA ABC_SMC_barmotin RVT-GII GIIM HpnB ispH Feature: gene Location: 59485-60492 bp Feature: domain Description: HpnA Location: 59512-60487 bp Feature: domain Description: HpnA Location: 59512 -60487 bp Feature: gene Location: 60601-62049 bp Feature: domain Description: ABC_SMC_barmotin Location: 60673-61726 bp Feature: domain Description: ABC_SMC_barmotin Location: 60673-6172 6 bp Feature: gene Location: 62176-63375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62341-62956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 341-62 956 bp Feature: domain Description: GIIM Note: maturase Location: 63013-63217 bp Feature: domain Description: GIIM Note: maturase Location: 63013-632 17 bp Feature: gene Location: 64006-65193 bp Feature: domain Description: HpnB Location: 64027-65179 bp Feature: domain Description: HpnB Location: 6402 7-65179 bp Feature: gene Location: 65596-66537 bp Feature: domain Description: ispH Location: 65599-66487 bp Feature: domain Description: ispH Location: 65599-66487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HpnA (TIGR03466), ABC_SMC_barmotin (cd03278), RVT-GII, GIIM (pfam08388), HpnB (TIGR03469), ispH (PRK01045)

Seq: CABWIK020000017.1 (134596 bp)
Overview 1 RT 1: 92424-97751 bp Neighborhood of RT #1 [92424, 97751] MFS_MucK Histone_HNS RVT-Retrons FIN Feature: gene Location: 92424-93620 bp Feature: domain Description: MFS_MucK Location: 92463-93597 bp Feature: domain Description: MFS_MucK Location: 92463 -93 597 bp Feature: gene Location: 93972-94301 bp Feature: domain Description: Histone_HNS Location: 93993-94230 bp Feature: domain Description: Histone_HNS Location: 93 993 -9423 0 bp Feature: gene Location: 94629-95978 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95094-95730 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95094-9573 0 bp Feature: gene Location: 96244-96816 bp Feature: domain Description: FIN Location: 96421-96781 bp Feature: domain Description: FIN Location: 96421-96781 bp Feature: gene Location: 97479-97751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389)

Seq: CABWIK020000019.1 (132743 bp)
Overview 1 RT 1: 3-4453 bp Neighborhood of RT #1 [3, 4575] IS285 RVT-GII gram_neg_porins FGase Feature: gene Location: 3-413 bp Feature: domain Description: IS285 Location: 6-399 bp Feature: domain Description: IS285 Location: 6-399 bp Feature: gene Location: 420-1865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831-1518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831-1518 bp Feature: gene Location: 2223-3326 bp Feature: domain Description: gram_neg_porins Location: 2301-3324 bp Feature: domain Description: gram_neg_porins Location: 2301-3324 bp Feature: gene Location: 3676-4575 bp Feature: domain Description: FGase Location: 3760-4453 bp Feature: domain Description: FGase Location: 3760-4 4 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, gram_neg_porins (cd00342), FGase (pfam05013)