myRT

myRT report for GCA_902501735.1_IBESS102

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Seq: CABVVI010000049.1 (15452 bp)
Overview 1 RT 1: 3-2592 bp Neighborhood of RT #1 [3, 2606] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-137 bp Feature: domain Description: DDE_Tnp_IS66 Location: 15-111 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 5-1 1 1 bp Feature: gene Location: 615-1832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801-1455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801 -1 455 bp Feature: domain Description: GIIM Note: maturase Location: 1533-1755 bp Feature: domain Description: GIIM Note: maturase Location: 1 533-1 755 bp Feature: gene Location: 1948-2094 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1960-2071 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 960-2071 bp Feature: gene Location: 2121-2606 bp Feature: domain Description: COG3547 Location: 2139-2592 bp Feature: domain Description: COG3547 Location: 21 39-2592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: CABVVI010000316.1 (4833 bp)
Overview 1 RT 1: 1-4234 bp Neighborhood of RT #1 [1, 4236] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 1-144 bp Feature: domain Description: Tra5 Location: 4-127 bp Feature: domain Description: Tra5 Location: 4-12 7 bp Feature: gene Location: 157-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1114 bp Feature: gene Location: 1583-2110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589-1733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589-1733 bp Feature: domain Description: GIIM Note: maturase Location: 1817-2033 bp Feature: domain Description: GIIM Note: maturase Location: 1817-2 033 bp Feature: gene Location: 2463-2705 bp Feature: gene Location: 2617-4236 bp Feature: domain Description: ushA Location: 2632-4234 bp Feature: domain Description: ushA Location: 2 632 -42 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: CABVVI010000019.1 (23268 bp)
Overview 1 RT 1: 8359-12100 bp Neighborhood of RT #1 [8359, 12333] HTH_XRE RVT-Retrons Resolvase Feature: gene Location: 8359-8823 bp Feature: domain Description: HTH_XRE Location: 8389-8560 bp Feature: domain Description: HTH_XRE Location: 83 89-8560 bp Feature: gene Location: 9063-9560 bp Feature: gene Location: 9695-11401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9845-10442 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9845-10442 bp Feature: gene Location: 11438-11647 bp Feature: gene Location: 11662-12333 bp Feature: domain Description: Resolvase Location: 11683-12100 bp Feature: domain Description: Resolvase Location: 11683 -12100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, Resolvase (smart00857)

Seq: CABVVI010000585.1 (2689 bp)
Overview 1 RT 1: 305-2346 bp Neighborhood of RT #1 [305, 2495] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 305-1087 bp Feature: domain Description: DDE_Tnp_1 Location: 311-1019 bp Feature: domain Description: DDE_Tnp_1 Location: 311-1019 bp Feature: gene Location: 1113-1316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221-1311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221-1311 bp Feature: gene Location: 1377-1733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1386-1707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1386-1707 bp Feature: gene Location: 1827-2495 bp Feature: domain Description: HTH_23 Location: 1935-2022 bp Feature: domain Description: HTH_23 Location: 1935-2022 bp Feature: domain Description: InsE Location: 2151-2346 bp Feature: domain Description: InsE Location: 2151-234 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: CABVVI010000003.1 (49083 bp)
Overview 1 RT 1: 38332-41647 bp Neighborhood of RT #1 [38332, 41772] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 38332-38607 bp Feature: gene Location: 38719-38901 bp Feature: gene Location: 39181-40848 bp Feature: domain Description: RVT_N Location: 39229-39466 bp Feature: domain Description: RVT_N Location: 39229-39466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39517-40159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395 17-4015 9 bp Feature: domain Description: GIIM Note: maturase Location: 40210-40444 bp Feature: domain Description: GIIM Note: maturase Location: 40210-40444 bp Feature: domain Description: HNHc Note: nucleases Location: 40654-40813 bp Feature: domain Description: HNHc Note: nucleases Location: 4065 4-40813 bp Feature: gene Location: 41162-41353 bp Feature: gene Location: 41350-41772 bp Feature: domain Description: DUF1380 Location: 41353-41647 bp Feature: domain Description: DUF1380 Location: 4135 3-41647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CABVVI010000416.1 (3775 bp)
Overview 1 RT 1: 865-3540 bp Neighborhood of RT #1 [865, 3668] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 865-1191 bp Feature: domain Description: InsE Location: 868-1189 bp Feature: domain Description: InsE Location: 86 8-1189 bp Feature: gene Location: 1191-1670 bp Feature: domain Description: PHA02517 Location: 1251-1605 bp Feature: domain Description: PHA02517 Location: 1251-16 05 bp Feature: gene Location: 2262-3668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2535-3267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2535-326 7 bp Feature: domain Description: GIIM Note: maturase Location: 3345-3540 bp Feature: domain Description: GIIM Note: maturase Location: 3345-3540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CABVVI010000439.1 (3614 bp)
Overview 1 RT 1: 788-3534 bp Neighborhood of RT #1 [788, 3534] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 788-982 bp Feature: gene Location: 1040-1261 bp Feature: gene Location: 1294-2967 bp Feature: domain Description: RVT_N Location: 1342-1585 bp Feature: domain Description: RVT_N Location: 1342-1585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1630-2275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1630-227 5 bp Feature: domain Description: GIIM Note: maturase Location: 2329-2560 bp Feature: domain Description: GIIM Note: maturase Location: 2329-2560 bp Feature: domain Description: HNHc Note: nucleases Location: 2761-2920 bp Feature: domain Description: HNHc Note: nucleases Location: 27 61-2920 bp Feature: gene Location: 3124-3258 bp Feature: gene Location: 3322-3534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)