myRT

myRT report for GCA_902501855.1_IBESS907

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Seq: CABVVV010000082.1 (6237 bp)
Overview 1 RT 1: 1472-4200 bp Neighborhood of RT #1 [1472, 4200] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1472-1666 bp Feature: gene Location: 1724-1945 bp Feature: gene Location: 1978-3651 bp Feature: domain Description: RVT_N Location: 2026-2269 bp Feature: domain Description: RVT_N Location: 2026-2269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2314-2959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 4-2959 bp Feature: domain Description: GIIM Note: maturase Location: 3013-3244 bp Feature: domain Description: GIIM Note: maturase Location: 301 3-3244 bp Feature: domain Description: HNHc Note: nucleases Location: 3445-3604 bp Feature: domain Description: HNHc Note: nucleases Location: 3445-3604 bp Feature: gene Location: 3808-3942 bp Feature: gene Location: 4006-4200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CABVVV010000014.1 (122480 bp)
Overview 1 RT 1: 27135-30846 bp Neighborhood of RT #1 [27135, 31109] Resolvase RVT-Retrons HTH_XRE Feature: gene Location: 27135-27806 bp Feature: domain Description: Resolvase Location: 27156-27573 bp Feature: domain Description: Resolvase Location: 2 7156-2 7573 bp Feature: gene Location: 27821-28030 bp Feature: gene Location: 28067-29773 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28217-28814 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 82 17-2 8814 bp Feature: gene Location: 29908-30405 bp Feature: gene Location: 30645-31109 bp Feature: domain Description: HTH_XRE Location: 30675-30846 bp Feature: domain Description: HTH_XRE Location: 30675-30846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-Retrons, HTH_XRE (smart00530)

Seq: CABVVV010000060.1 (19285 bp)
Overview 1 RT 1: 867-4803 bp Neighborhood of RT #1 [867, 4805] InsE PHA02517 RVT-GII GIIM PHA02517 PRK09413 Feature: gene Location: 867-1193 bp Feature: domain Description: InsE Location: 870-1191 bp Feature: domain Description: InsE Location: 870-1191 bp Feature: gene Location: 1193-1672 bp Feature: domain Description: PHA02517 Location: 1253-1607 bp Feature: domain Description: PHA02517 Location: 1253 -1607 bp Feature: gene Location: 2264-3787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2537-3269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253 7-3 269 bp Feature: domain Description: GIIM Note: maturase Location: 3347-3542 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 47-3 542 bp Feature: gene Location: 3964-4350 bp Feature: domain Description: PHA02517 Location: 3967-4348 bp Feature: domain Description: PHA02517 Location: 3 967-43 48 bp Feature: gene Location: 4440-4805 bp Feature: domain Description: PRK09413 Location: 4443-4803 bp Feature: domain Description: PRK09413 Location: 4443 -4803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: CABVVV010000097.1 (3680 bp)
Overview 1 RT 1: 113-3114 bp Neighborhood of RT #1 [113, 3116] GIIM RVT-GII GIIM ushA Feature: gene Location: 113-346 bp Feature: domain Description: GIIM Note: maturase Location: 134-248 bp Feature: domain Description: GIIM Note: maturase Location: 134 -24 8 bp Feature: gene Location: 430-957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 36-580 bp Feature: domain Description: GIIM Note: maturase Location: 664-880 bp Feature: domain Description: GIIM Note: maturase Location: 664 -880 bp Feature: gene Location: 1310-1495 bp Feature: gene Location: 1464-3116 bp Feature: domain Description: ushA Location: 1476-3114 bp Feature: domain Description: ushA Location: 14 76-3114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, ushA (PRK09558)

Seq: CABVVV010000077.1 (7116 bp)
Overview 1 RT 1: 4511-7088 bp Neighborhood of RT #1 [4511, 7114] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 4511-4996 bp Feature: domain Description: COG3547 Location: 4529-4982 bp Feature: domain Description: COG35 47 Location: 45 29-4982 bp Feature: gene Location: 5092-5259 bp Feature: gene Location: 5285-6502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5471-6125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 471-6125 bp Feature: domain Description: GIIM Note: maturase Location: 6203-6425 bp Feature: domain Description: GIIM Note: maturase Location: 6203-6425 bp Feature: gene Location: 6513-6932 bp Feature: gene Location: 6980-7114 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6992-7088 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6992-7088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: CABVVV010000123.1 (1867 bp)
Overview 1 RT 1: 378-1569 bp Neighborhood of RT #1 [378, 1739] Tra5 RVT-GII Feature: gene Location: 378-599 bp Feature: domain Description: Tra5 Location: 390-582 bp Feature: domain Description: Tra5 Location: 390-582 bp Feature: gene Location: 612-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912-1569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912-156 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII

Seq: CABVVV010000108.1 (2690 bp)
Overview 1 RT 1: 306-2347 bp Neighborhood of RT #1 [306, 2496] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 306-1088 bp Feature: domain Description: DDE_Tnp_1 Location: 312-1020 bp Feature: domain Description: DDE_Tnp_1 Location: 312-1020 bp Feature: gene Location: 1114-1317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1312 bp Feature: gene Location: 1378-1734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1387-1708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1387 -17 08 bp Feature: gene Location: 1828-2496 bp Feature: domain Description: HTH_23 Location: 1936-2023 bp Feature: domain Description: HTH_23 Location: 1936-2023 bp Feature: domain Description: InsE Location: 2152-2347 bp Feature: domain Description: InsE Location: 2152-2347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)