myRT

myRT report for GCA_902501915.1_IBESS231

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Seq: CABVWA010000228.1 (2476 bp)
Overview 1 RT 1: 92-2133 bp Neighborhood of RT #1 [92, 2282] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 92-874 bp Feature: domain Description: DDE_Tnp_1 Location: 98-806 bp Feature: domain Description: DDE_Tnp_1 Location: 98-806 bp Feature: gene Location: 900-1103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 008-1 098 bp Feature: gene Location: 1164-1520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1173-1494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 73-1 494 bp Feature: gene Location: 1614-2282 bp Feature: domain Description: HTH_23 Location: 1722-1809 bp Feature: domain Description: HTH_23 Location: 1 722-1 809 bp Feature: domain Description: InsE Location: 1938-2133 bp Feature: domain Description: InsE Location: 1 938-21 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: CABVWA010000208.1 (3780 bp)
Overview 1 RT 1: 2234-3779 bp Neighborhood of RT #1 [2234, 3779] RVT-GII GIIM HNHc Feature: gene Location: 2234-2428 bp Feature: gene Location: 2486-2707 bp Feature: gene Location: 2740-3501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2749-2809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 749-2 809 bp Feature: domain Description: GIIM Note: maturase Location: 2863-3094 bp Feature: domain Description: GIIM Note: maturase Location: 2 863-3094 bp Feature: domain Description: HNHc Note: nucleases Location: 3295-3454 bp Feature: domain Description: HNHc Note: nucleases Location: 32 95-3454 bp Feature: gene Location: 3597-3779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CABVWA010000149.1 (7690 bp)
Overview 1 RT 1: 1338-7285 bp Neighborhood of RT #1 [1338, 7530] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 1338-5456 bp Feature: domain Description: ESPR Location: 1341-1410 bp Feature: domain Description: ESPR Location: 13 41-1410 bp Feature: domain Description: Peptidase_S6 Location: 1491-3663 bp Feature: domain Description: Peptidase_S6 Location: 1491-3 663 bp Feature: domain Description: autotrans_barl Location: 4227-5454 bp Feature: domain Description: autotrans_barl Location: 4227-5454 bp Feature: gene Location: 5621-6007 bp Feature: domain Description: PHA02517 Location: 5624-6005 bp Feature: domain Description: PHA02517 Location: 5624-6005 bp Feature: gene Location: 6184-7530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6280-7012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6280-7012 bp Feature: domain Description: GIIM Note: maturase Location: 7087-7285 bp Feature: domain Description: GIIM Note: maturase Location: 7087-7285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CABVWA010000189.1 (4833 bp)
Overview 1 RT 1: 1-4234 bp Neighborhood of RT #1 [1, 4236] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 1-144 bp Feature: domain Description: Tra5 Location: 4-127 bp Feature: domain Description: Tra5 Location: 4 -127 bp Feature: gene Location: 157-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 57-1114 bp Feature: gene Location: 1583-2110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589-1733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589-1733 bp Feature: domain Description: GIIM Note: maturase Location: 1817-2033 bp Feature: domain Description: GIIM Note: maturase Location: 1817-2033 bp Feature: gene Location: 2463-2705 bp Feature: gene Location: 2617-4236 bp Feature: domain Description: ushA Location: 2632-4234 bp Feature: domain Description: ushA Location: 2632-4 234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: CABVWA010000169.1 (6296 bp)
Overview 1 RT 1: 3-2592 bp Neighborhood of RT #1 [3, 2606] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-137 bp Feature: domain Description: DDE_Tnp_IS66 Location: 15-111 bp Feature: domain Description: DDE_Tnp_IS66 Location: 15 -111 bp Feature: gene Location: 615-1832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801-1455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801-145 5 bp Feature: domain Description: GIIM Note: maturase Location: 1533-1755 bp Feature: domain Description: GIIM Note: maturase Location: 15 33-175 5 bp Feature: gene Location: 1948-2094 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1960-2071 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1960-2071 bp Feature: gene Location: 2121-2606 bp Feature: domain Description: COG3547 Location: 2139-2592 bp Feature: domain Description: COG35 47 Location: 2139-25 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )