myRT

myRT report for GCA_902502415.1_IBESS321

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Seq: CABVXX010000181.1 (5828 bp)
Overview 1 RT 1: 3-2592 bp Neighborhood of RT #1 [3, 2606] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-137 bp Feature: domain Description: DDE_Tnp_IS66 Location: 15-111 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 5-1 1 1 bp Feature: gene Location: 615-1832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801-1455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801 -1 455 bp Feature: domain Description: GIIM Note: maturase Location: 1533-1755 bp Feature: domain Description: GIIM Note: maturase Location: 1 533-1 755 bp Feature: gene Location: 1948-2094 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1960-2071 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 960-2071 bp Feature: gene Location: 2121-2606 bp Feature: domain Description: COG3547 Location: 2139-2592 bp Feature: domain Description: COG3547 Location: 21 39-2592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: CABVXX010000155.1 (7690 bp)
Overview 1 RT 1: 161-6351 bp Neighborhood of RT #1 [161, 6353] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 161-1507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 57-989 bp Feature: domain Description: GIIM Note: maturase Location: 1064-1262 bp Feature: domain Description: GIIM Note: maturase Location: 1064-12 62 bp Feature: gene Location: 1684-2070 bp Feature: domain Description: PHA02517 Location: 1687-2068 bp Feature: domain Description: PHA02 517 Location: 1687-2 068 bp Feature: gene Location: 2235-6353 bp Feature: domain Description: ESPR Location: 2238-2307 bp Feature: domain Description: ESPR Location: 2 2 38-2 307 bp Feature: domain Description: Peptidase_S6 Location: 2388-4560 bp Feature: domain Description: Peptidase_S6 Location: 2 388-4560 bp Feature: domain Description: autotrans_barl Location: 5124-6351 bp Feature: domain Description: autotrans_barl Location: 512 4-6351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: CABVXX010000221.1 (3237 bp)
Overview 1 RT 1: 213-2894 bp Neighborhood of RT #1 [213, 3043] DDE_Tnp_1 DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 213-650 bp Feature: domain Description: DDE_Tnp_1 Location: 255-366 bp Feature: domain Description: DDE_Tnp_1 Location: 255-3 66 bp Feature: gene Location: 853-1635 bp Feature: domain Description: DDE_Tnp_1 Location: 859-1567 bp Feature: domain Description: DDE_Tnp_1 Location: 859-1567 bp Feature: gene Location: 1661-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1769-1859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1769-1859 bp Feature: gene Location: 1925-2281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1934-2255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 4-2255 bp Feature: gene Location: 2375-3043 bp Feature: domain Description: HTH_23 Location: 2483-2570 bp Feature: domain Description: HTH_23 Location: 2483 -2570 bp Feature: domain Description: InsE Location: 2699-2894 bp Feature: domain Description: InsE Location: 2699-2894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: CABVXX010000216.1 (3780 bp)
Overview 1 RT 1: 2234-3779 bp Neighborhood of RT #1 [2234, 3779] RVT-GII GIIM HNHc Feature: gene Location: 2234-2428 bp Feature: gene Location: 2486-2707 bp Feature: gene Location: 2740-3501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2749-2809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274 9-2809 bp Feature: domain Description: GIIM Note: maturase Location: 2863-3094 bp Feature: domain Description: GIIM Note: maturase Location: 2863-3094 bp Feature: domain Description: HNHc Note: nucleases Location: 3295-3454 bp Feature: domain Description: HNHc Note: nucleases Location: 3295-34 54 bp Feature: gene Location: 3597-3779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CABVXX010000197.1 (4833 bp)
Overview 1 RT 1: 2129-4813 bp Neighborhood of RT #1 [2129, 4830] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 2129-2371 bp Feature: gene Location: 2543-2698 bp Feature: gene Location: 2724-3251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2730-2874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2730-2874 bp Feature: domain Description: GIIM Note: maturase Location: 2958-3174 bp Feature: domain Description: GIIM Note: maturase Location: 295 8-3174 bp Feature: gene Location: 3261-3533 bp Feature: gene Location: 3550-4677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3850-4507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385 0-45 07 bp Feature: gene Location: 4690-4830 bp Feature: domain Description: Tra5 Location: 4693-4813 bp Feature: domain Description: Tra5 Location: 4693-4813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)