myRT

myRT report for GCA_902502995.1_IBESS580

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Seq: CABWAA010000229.1 (1759 bp)
Overview 1 RT 1: 183-1416 bp Neighborhood of RT #1 [183, 1565] RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 183-386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291-381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 -381 bp Feature: gene Location: 447-803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-777 bp Feature: gene Location: 897-1565 bp Feature: domain Description: HTH_23 Location: 1005-1092 bp Feature: domain Description: HTH_23 Location: 1 005-1 092 bp Feature: domain Description: InsE Location: 1221-1416 bp Feature: domain Description: InsE Location: 1 221 -1 41 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: CABWAA010000181.1 (4833 bp)
Overview 1 RT 1: 1-4234 bp Neighborhood of RT #1 [1, 4236] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 1-144 bp Feature: domain Description: Tra5 Location: 4-127 bp Feature: domain Description: Tra5 Location: 4-12 7 bp Feature: gene Location: 157-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1114 bp Feature: gene Location: 1583-2110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589-1733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589-1733 bp Feature: domain Description: GIIM Note: maturase Location: 1817-2033 bp Feature: domain Description: GIIM Note: maturase Location: 1817-2 033 bp Feature: gene Location: 2463-2705 bp Feature: gene Location: 2617-4236 bp Feature: domain Description: ushA Location: 2632-4234 bp Feature: domain Description: ushA Location: 2 632 -42 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: CABWAA010000147.1 (7691 bp)
Overview 1 RT 1: 1338-7285 bp Neighborhood of RT #1 [1338, 7530] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 1338-5456 bp Feature: domain Description: ESPR Location: 1341-1410 bp Feature: domain Description: ESPR Location: 13 41-1410 bp Feature: domain Description: Peptidase_S6 Location: 1491-3663 bp Feature: domain Description: Peptidase_S6 Location: 1491-3 663 bp Feature: domain Description: autotrans_barl Location: 4227-5454 bp Feature: domain Description: autotrans_barl Location: 4227-5454 bp Feature: gene Location: 5621-6007 bp Feature: domain Description: PHA02517 Location: 5624-6005 bp Feature: domain Description: PHA02517 Location: 5624-6005 bp Feature: gene Location: 6184-7530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6280-7012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6280-7012 bp Feature: domain Description: GIIM Note: maturase Location: 7087-7285 bp Feature: domain Description: GIIM Note: maturase Location: 7087-7285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CABWAA010000165.1 (5828 bp)
Overview 1 RT 1: 3223-5800 bp Neighborhood of RT #1 [3223, 5826] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3223-3708 bp Feature: domain Description: COG3547 Location: 3241-3694 bp Feature: domain Description: COG354 7 Location: 324 1-3694 bp Feature: gene Location: 3804-3971 bp Feature: gene Location: 3997-5214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 183-4 837 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: domain Description: GIIM Note: maturase Location: 4 915-5137 bp Feature: gene Location: 5225-5644 bp Feature: gene Location: 5692-5826 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5704-5800 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5704 -5800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: CABWAA010000194.1 (3780 bp)
Overview 1 RT 1: 2-1547 bp Neighborhood of RT #1 [2, 1547] RVT-GII GIIM HNHc Feature: gene Location: 2-184 bp Feature: gene Location: 280-1041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-349 bp Feature: domain Description: GIIM Note: maturase Location: 403-634 bp Feature: domain Description: GIIM Note: maturase Location: 403-634 bp Feature: domain Description: HNHc Note: nucleases Location: 835-994 bp Feature: domain Description: HNHc Note: nucleases Location: 835 -994 bp Feature: gene Location: 1074-1295 bp Feature: gene Location: 1353-1547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)