myRT

myRT report for GCA_902503025.1_IBESS1011

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Seq: CABWAC010000200.1 (3237 bp)
Overview 1 RT 1: 213-2894 bp Neighborhood of RT #1 [213, 3043] DDE_Tnp_1 DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 213-650 bp Feature: domain Description: DDE_Tnp_1 Location: 255-366 bp Feature: domain Description: DDE_Tnp_1 Location: 255-366 bp Feature: gene Location: 853-1635 bp Feature: domain Description: DDE_Tnp_1 Location: 859-1567 bp Feature: domain Description: DDE_Tnp_1 Location: 859-1 567 bp Feature: gene Location: 1661-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1769-1859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 769-1 859 bp Feature: gene Location: 1925-2281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1934-2255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 934-2255 bp Feature: gene Location: 2375-3043 bp Feature: domain Description: HTH_23 Location: 2483-2570 bp Feature: domain Description: HTH_23 Location: 2483-2570 bp Feature: domain Description: InsE Location: 2699-2894 bp Feature: domain Description: InsE Location: 2699-2894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: CABWAC010000157.1 (6296 bp)
Overview 1 RT 1: 3691-6268 bp Neighborhood of RT #1 [3691, 6294] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3691-4176 bp Feature: domain Description: COG3547 Location: 3709-4162 bp Feature: domain Description: COG3547 Location: 3709-4162 bp Feature: gene Location: 4272-4439 bp Feature: gene Location: 4465-5682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4651-5305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4651-5305 bp Feature: domain Description: GIIM Note: maturase Location: 5383-5605 bp Feature: domain Description: GIIM Note: maturase Location: 5383-5605 bp Feature: gene Location: 5693-6112 bp Feature: gene Location: 6160-6294 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6172-6268 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6172 -62 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: CABWAC010000142.1 (7691 bp)
Overview 1 RT 1: 162-6352 bp Neighborhood of RT #1 [162, 6354] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 162-1508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-990 bp Feature: domain Description: GIIM Note: maturase Location: 1065-1263 bp Feature: domain Description: GIIM Note: maturase Location: 1065-1263 bp Feature: gene Location: 1685-2071 bp Feature: domain Description: PHA02517 Location: 1688-2069 bp Feature: domain Description: PHA02517 Location: 1688-2069 bp Feature: gene Location: 2236-6354 bp Feature: domain Description: ESPR Location: 2239-2308 bp Feature: domain Description: ESPR Location: 223 9-23 08 bp Feature: domain Description: Peptidase_S6 Location: 2389-4561 bp Feature: domain Description: Peptidase_S6 Location: 23 89-4561 bp Feature: domain Description: autotrans_barl Location: 5125-6352 bp Feature: domain Description: autotrans_barl Location: 5125-63 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: CABWAC010000195.1 (3780 bp)
Overview 1 RT 1: 2-1547 bp Neighborhood of RT #1 [2, 1547] RVT-GII GIIM HNHc Feature: gene Location: 2-184 bp Feature: gene Location: 280-1041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-34 9 bp Feature: domain Description: GIIM Note: maturase Location: 403-634 bp Feature: domain Description: GIIM Note: maturase Location: 4 03-634 bp Feature: domain Description: HNHc Note: nucleases Location: 835-994 bp Feature: domain Description: HNHc Note: nucleases Location: 835-994 bp Feature: gene Location: 1074-1295 bp Feature: gene Location: 1353-1547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CABWAC010000012.1 (72548 bp)
Overview 1 RT 1: 57346-62926 bp Neighborhood of RT #1 [57346, 62931] RVT-Retrons Q P Feature: gene Location: 57346-57681 bp Feature: gene Location: 57953-58096 bp Feature: gene Location: 58327-60084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58471-59092 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 8471-5 9092 bp Feature: gene Location: 60134-61165 bp Feature: domain Description: Q Location: 60137-61160 bp Feature: domain Description: Q Location: 60137-61160 bp Feature: gene Location: 61165-62931 bp Feature: domain Description: P Location: 61192-62926 bp Feature: domain Description: P Location: 61192-62926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536), P (PHA02535)

Seq: CABWAC010000181.1 (4833 bp)
Overview 1 RT 1: 2129-4813 bp Neighborhood of RT #1 [2129, 4830] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 2129-2371 bp Feature: gene Location: 2543-2698 bp Feature: gene Location: 2724-3251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2730-2874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2730-2874 bp Feature: domain Description: GIIM Note: maturase Location: 2958-3174 bp Feature: domain Description: GIIM Note: maturase Location: 2958-3174 bp Feature: gene Location: 3261-3533 bp Feature: gene Location: 3550-4677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3850-4507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3850-4507 bp Feature: gene Location: 4690-4830 bp Feature: domain Description: Tra5 Location: 4693-4813 bp Feature: domain Description: Tra5 Location: 46 93-4813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)