myRT

myRT report for GCA_902503825.1_IBESS450

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Seq: CABWDD010000164.1 (5828 bp)
Overview 1 RT 1: 3-2592 bp Neighborhood of RT #1 [3, 2606] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-137 bp Feature: domain Description: DDE_Tnp_IS66 Location: 15-111 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 5-1 1 1 bp Feature: gene Location: 615-1832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801-1455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801 -1 455 bp Feature: domain Description: GIIM Note: maturase Location: 1533-1755 bp Feature: domain Description: GIIM Note: maturase Location: 1 533-1 755 bp Feature: gene Location: 1948-2094 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1960-2071 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 960-2071 bp Feature: gene Location: 2121-2606 bp Feature: domain Description: COG3547 Location: 2139-2592 bp Feature: domain Description: COG3547 Location: 21 39-2592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: CABWDD010000175.1 (4833 bp)
Overview 1 RT 1: 1-4234 bp Neighborhood of RT #1 [1, 4236] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 1-144 bp Feature: domain Description: Tra5 Location: 4-127 bp Feature: domain Description: Tra5 Location: 4-12 7 bp Feature: gene Location: 157-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1114 bp Feature: gene Location: 1583-2110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589-1733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589-1733 bp Feature: domain Description: GIIM Note: maturase Location: 1817-2033 bp Feature: domain Description: GIIM Note: maturase Location: 1817-2 033 bp Feature: gene Location: 2463-2705 bp Feature: gene Location: 2617-4236 bp Feature: domain Description: ushA Location: 2632-4234 bp Feature: domain Description: ushA Location: 2 632 -42 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: CABWDD010000192.1 (3780 bp)
Overview 1 RT 1: 2-1547 bp Neighborhood of RT #1 [2, 1547] RVT-GII GIIM HNHc Feature: gene Location: 2-184 bp Feature: gene Location: 280-1041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-3 49 bp Feature: domain Description: GIIM Note: maturase Location: 403-634 bp Feature: domain Description: GIIM Note: maturase Location: 403 -63 4 bp Feature: domain Description: HNHc Note: nucleases Location: 835-994 bp Feature: domain Description: HNHc Note: nucleases Location: 83 5-994 bp Feature: gene Location: 1074-1295 bp Feature: gene Location: 1353-1547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CABWDD010000211.1 (1921 bp)
Overview 1 RT 1: 345-1578 bp Neighborhood of RT #1 [345, 1727] RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 345-548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453-543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 53-54 3 bp Feature: gene Location: 609-965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 618-939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 618-939 bp Feature: gene Location: 1059-1727 bp Feature: domain Description: HTH_23 Location: 1167-1254 bp Feature: domain Description: HTH_23 Location: 1167-1254 bp Feature: domain Description: InsE Location: 1383-1578 bp Feature: domain Description: InsE Location: 1383-1578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: CABWDD010000145.1 (7691 bp)
Overview 1 RT 1: 162-6352 bp Neighborhood of RT #1 [162, 6354] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 162-1508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 8-990 bp Feature: domain Description: GIIM Note: maturase Location: 1065-1263 bp Feature: domain Description: GIIM Note: maturase Location: 1065 -1263 bp Feature: gene Location: 1685-2071 bp Feature: domain Description: PHA02517 Location: 1688-2069 bp Feature: domain Description: PHA025 17 Location: 1688-2069 bp Feature: gene Location: 2236-6354 bp Feature: domain Description: ESPR Location: 2239-2308 bp Feature: domain Description: ESPR Location: 2239-2308 bp Feature: domain Description: Peptidase_S6 Location: 2389-4561 bp Feature: domain Description: Peptidase_S6 Location: 2389-45 61 bp Feature: domain Description: autotrans_barl Location: 5125-6352 bp Feature: domain Description: autotrans_barl Location: 5 125 -635 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)