myRT

myRT report for GCA_902503985.1_IBESS670

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Seq: CABWDS010000126.1 (6245 bp)
Overview 1 RT 1: 3642-6216 bp Neighborhood of RT #1 [3642, 6242] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3642-4127 bp Feature: domain Description: COG3547 Location: 3660-4113 bp Feature: domain Description: COG3547 Location: 3660-41 1 3 bp Feature: gene Location: 4223-4390 bp Feature: gene Location: 4416-5633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4602-5256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4602-5256 bp Feature: domain Description: GIIM Note: maturase Location: 5334-5556 bp Feature: domain Description: GIIM Note: maturase Location: 5334-5556 bp Feature: gene Location: 5644-6063 bp Feature: gene Location: 6111-6242 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6123-6216 bp Feature: domain Description: DDE_Tnp_IS66 Location: 61 23-621 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: CABWDS010000165.1 (2559 bp)
Overview 1 RT 1: 253-2294 bp Neighborhood of RT #1 [253, 2443] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 253-1035 bp Feature: domain Description: DDE_Tnp_1 Location: 259-967 bp Feature: domain Description: DDE_Tnp_1 Location: 2 59-967 bp Feature: gene Location: 1061-1264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1169-1259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1169-12 59 bp Feature: gene Location: 1325-1681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1334-1655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1334-1655 bp Feature: gene Location: 1775-2443 bp Feature: domain Description: HTH_23 Location: 1883-1970 bp Feature: domain Description: HTH_2 3 Location: 1883-1970 bp Feature: domain Description: InsE Location: 2099-2294 bp Feature: domain Description: InsE Location: 2 099-2 2 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: CABWDS010000018.1 (80074 bp)
Overview 1 RT 1: 40318-44198 bp Neighborhood of RT #1 [40318, 44203] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 40318-40776 bp Feature: domain Description: dut Location: 40324-40771 bp Feature: domain Description: dut Location: 403 24-40771 bp Feature: gene Location: 40883-41479 bp Feature: domain Description: slmA Location: 40889-41465 bp Feature: domain Description: slmA Location: 40889-41465 bp Feature: gene Location: 41525-42484 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41660-42209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41660-42209 bp Feature: gene Location: 42780-43436 bp Feature: domain Description: pyrE Location: 42798-43431 bp Feature: domain Description: pyrE Location: 42798-43 43 1 bp Feature: gene Location: 43487-44203 bp Feature: domain Description: rph Location: 43490-44198 bp Feature: domain Description: rph Location: 43 490-44198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: CABWDS010000130.1 (5899 bp)
Overview 1 RT 1: 2789-5554 bp Neighborhood of RT #1 [2789, 5571] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 2789-3031 bp Feature: gene Location: 3203-3358 bp Feature: gene Location: 3384-3911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3390-3534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3390-3534 bp Feature: domain Description: GIIM Note: maturase Location: 3618-3834 bp Feature: domain Description: GIIM Note: maturase Location: 3618-3834 bp Feature: gene Location: 3921-4193 bp Feature: gene Location: 4210-5337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4510-5167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 510-5167 bp Feature: gene Location: 5350-5571 bp Feature: domain Description: Tra5 Location: 5362-5554 bp Feature: domain Description: Tra5 Location: 5362-5554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: CABWDS010000104.1 (9550 bp)
Overview 1 RT 1: 5157-8129 bp Neighborhood of RT #1 [5157, 8129] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 5157-5423 bp Feature: gene Location: 5659-5793 bp Feature: gene Location: 5950-7623 bp Feature: domain Description: RVT_N Location: 5998-6241 bp Feature: domain Description: RVT_N Location: 5 998-6241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6286-6931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6286-6931 bp Feature: domain Description: GIIM Note: maturase Location: 6985-7216 bp Feature: domain Description: GIIM Note: maturase Location: 6985 -7216 bp Feature: domain Description: HNHc Note: nucleases Location: 7417-7576 bp Feature: domain Description: HNHc Note: nucleases Location: 7417-75 76 bp Feature: gene Location: 7656-7850 bp Feature: gene Location: 7935-8129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CABWDS010000069.1 (21491 bp)
Overview 1 RT 1: 673-5687 bp Neighborhood of RT #1 [673, 5731] RVT-UG5 nitrilase PRK09692 Feature: gene Location: 673-816 bp Feature: gene Location: 822-1511 bp Feature: gene Location: 1508-3547 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1514-1673 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1514-16 73 bp Feature: domain Description: nitrilase Location: 2882-3467 bp Feature: domain Description: nitrilase Location: 2882-346 7 bp Feature: gene Location: 3835-4383 bp Feature: gene Location: 4475-5731 bp Feature: domain Description: PRK09692 Location: 4484-5687 bp Feature: domain Description: PRK096 92 Location: 4484-56 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional)