myRT

myRT report for GCA_902507685.1_SRRSH64

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Seq: CABWRC010000015.1 (146231 bp)
Overview 1 RT 1: 107444-114312 bp Neighborhood of RT #1 [107444, 114314] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 107444-108172 bp Feature: domain Description: FimC Location: 107492-108155 bp Feature: domain Description: FimC Location: 1 07492-1 081 55 bp Feature: gene Location: 108204-110813 bp Feature: domain Description: FimD Location: 108261-110802 bp Feature: domain Description: FimD Location: 1 08261 -1 1 0802 bp Feature: gene Location: 110813-112891 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 111221-111665 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 1 221 -1 1 1 665 bp Feature: gene Location: 112948-113388 bp Feature: domain Description: Integrase_1 Location: 112954-113170 bp Feature: domain Description: Integrase_1 Location: 1 1 2954-1 1 31 70 bp Feature: gene Location: 113649-114314 bp Feature: domain Description: INT_P4_C Location: 113754-114312 bp Feature: domain Description: INT_P4_C Location: 1 1 3754-1 1 431 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: CABWRC010000055.1 (15201 bp)
Overview 1 RT 1: 408-4844 bp Neighborhood of RT #1 [408, 4852] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 408-785 bp Feature: domain Description: DDE_Tnp_IS1 Location: 411-783 bp Feature: domain Description: DDE_Tnp_IS1 Location: 411-783 bp Feature: gene Location: 830-1105 bp Feature: domain Description: InsA Location: 833-1097 bp Feature: domain Description: InsA Location: 833-1097 bp Feature: gene Location: 1257-2744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662-2352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662 -2 352 bp Feature: gene Location: 2769-3581 bp Feature: domain Description: PRK10276 Location: 3201-3564 bp Feature: domain Description: PRK102 76 Location: 32 01-3564 bp Feature: gene Location: 3581-4852 bp Feature: domain Description: umuC Location: 3584-4844 bp Feature: domain Description: umuC Location: 3584-4844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)