myRT

myRT report for GCA_902636905.1_WOLB0066

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Seq: CACPTA010000063.1 (5139 bp)
Overview 1 RT 1: 557-4762 bp Neighborhood of RT #1 [557, 5139] RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 557-1795 bp Feature: gene Location: 2005-5139 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2986-3160 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2986-31 60 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3514-3856 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 351 4-3856 bp Feature: domain Description: Integrase_H2C2 Location: 4261-4405 bp Feature: domain Description: Integrase_H2C2 Location: 4261 -4405 bp Feature: domain Description: rve Location: 4456-4762 bp Feature: domain Description: rve Location: 4456-4762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG13/RVT-UG23/RVT-DGRs/RVT-Retrons(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: CACPTA010000178.1 (2478 bp)
Overview 1 RT 1: 1-2044 bp Neighborhood of RT #1 [1, 2109] RVT-GII Virulence_RhuM Feature: gene Location: 1-519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256-520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 56-52 0 bp Feature: gene Location: 690-893 bp Feature: gene Location: 1105-2109 bp Feature: domain Description: Virulence_RhuM Location: 1294-2044 bp Feature: domain Description: Virulence_RhuM Location: 12 94-2 044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Virulence_RhuM (pfam13310)

Seq: CACPTA010000272.1 (1574 bp)
Overview 1 RT 1: 48-1543 bp Neighborhood of RT #1 [48, 1572] RVT_N RVT-GII YkfC Feature: gene Location: 48-191 bp Feature: gene Location: 229-1572 bp Feature: domain Description: RVT_N Location: 280-523 bp Feature: domain Description: RVT_N Location: 280-523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1219 bp Feature: domain Description: YkfC Location: 1219-1543 bp Feature: domain Description: YkfC Location: 1219-1543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: CACPTA010000100.1 (3963 bp)
Overview 1 RT 1: 3-3592 bp Neighborhood of RT #1 [3, 3960] PRK07078 repA RVT-GII Feature: gene Location: 3-1904 bp Feature: domain Description: PRK07078 Location: 6-690 bp Feature: domain Description: PRK07078 Location: 6-690 bp Feature: domain Description: repA Location: 789-1548 bp Feature: domain Description: repA Location: 789-154 8 bp Feature: gene Location: 3070-3960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3088-3592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3088-3592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07078 (hypothetical protein; Validated), repA, RVT-GII

Seq: CACPTA010000239.1 (1788 bp)
Overview 1 RT 1: 70-1121 bp Neighborhood of RT #1 [70, 1228] RVT-UG26 Peptidase_A17 Feature: gene Location: 70-504 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 295-496 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 295 -496 bp Feature: gene Location: 613-837 bp Feature: gene Location: 878-1228 bp Feature: domain Description: Peptidase_A17 Location: 881-1121 bp Feature: domain Description: Peptidase_A17 Location: 881-1121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, Peptidase_A17 (pfam05380)

Seq: CACPTA010000322.1 (1198 bp)
Overview 1 RT 1: 156-1196 bp Neighborhood of RT #1 [156, 1196] RT_RNaseH_2 RVT-DGRs Feature: gene Location: 156-377 bp Feature: domain Description: RT_RNaseH_2 Location: 207-375 bp Feature: domain Description: RT_RNaseH_2 Location: 207-375 bp Feature: gene Location: 431-745 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 461-671 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46 1-6 71 bp Feature: gene Location: 984-1196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_RNaseH_2 (pfam17919), RVT-DGRs

Seq: CACPTA010000162.1 (2611 bp)
Overview 1 RT 1: 2-2610 bp Neighborhood of RT #1 [2, 2610] RVT-GII Feature: gene Location: 2-2227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 746-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 46-1253 bp Feature: gene Location: 2344-2610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CACPTA010000190.1 (2292 bp)
Overview 1 RT 1: 763-2130 bp Neighborhood of RT #1 [763, 2291] RVT-UG26 Peptidase_A17 Feature: gene Location: 763-1137 bp Feature: gene Location: 1168-1479 bp Feature: gene Location: 1605-2291 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1638-1842 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1638 -18 42 bp Feature: domain Description: Peptidase_A17 Location: 2013-2130 bp Feature: domain Description: Peptidase_A17 Location: 2013-2130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, Peptidase_A17 (pfam05380)