myRT

myRT report for GCA_902636955.1_WOLB0060

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Seq: CACPSS010000097.1 (4275 bp)
Overview 1 RT 1: 3-2614 bp Neighborhood of RT #1 [3, 2614] RVT-CRISPR-like Feature: gene Location: 3-422 bp Feature: gene Location: 525-1235 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 576-1140 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 576-1 1 40 bp Feature: gene Location: 1486-1824 bp Feature: gene Location: 1988-2614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: CACPSS010000192.1 (1022 bp)
Overview 1 RT 1: 89-905 bp Neighborhood of RT #1 [89, 1006] RVT-UNC RT_RNaseH_2 Feature: gene Location: 89-1006 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 359-566 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 359-566 bp Feature: domain Description: RT_RNaseH_2 Location: 773-905 bp Feature: domain Description: RT_RNaseH_2 Location: 773-905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-DGRs/RVT-UG26/RVT-UG17(RVT-UNC), RT_RNaseH_2 (pfam17919)

Seq: CACPSS010000135.1 (2419 bp)
Overview 1 RT 1: 3-2406 bp Neighborhood of RT #1 [3, 2417] retropepsin_like RVT-CRISPR-like RNase_HI_RT_Ty3 Integrase_H2C2 Feature: gene Location: 3-2417 bp Feature: domain Description: retropepsin_like Location: 6-273 bp Feature: domain Description: retropepsin_like Location: 6-273 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 999-1170 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 999-1170 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1473-1821 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1473 -1821 bp Feature: domain Description: Integrase_H2C2 Location: 2262-2406 bp Feature: domain Description: Integrase_H2C2 Location: 2262-2406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-CRISPR, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921)

Seq: CACPSS010000026.1 (14149 bp)
Overview 1 RT 1: 7299-13207 bp Neighborhood of RT #1 [7299, 13563] Virulence_RhuM RVT-GII PRK07078 repA Feature: gene Location: 7299-8303 bp Feature: domain Description: Virulence_RhuM Location: 7488-8238 bp Feature: domain Description: Virulence_RhuM Location: 74 88-8238 bp Feature: gene Location: 8515-8718 bp Feature: gene Location: 8889-10202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9144-9834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914 4 -9834 bp Feature: gene Location: 10115-10387 bp Feature: gene Location: 11368-13563 bp Feature: domain Description: PRK07078 Location: 11431-12349 bp Feature: domain Description: PRK07078 Location: 114 31-1234 9 bp Feature: domain Description: repA Location: 12448-13207 bp Feature: domain Description: repA Location: 124 4 8-13207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Virulence_RhuM (pfam13310), RVT-GII, PRK07078 (hypothetical protein; Validated), repA

Seq: CACPSS010000147.1 (2053 bp)
Overview 1 RT 1: 70-1521 bp Neighborhood of RT #1 [70, 1778] RVT-UG26 Peptidase_A17 Integrase_H2C2 Feature: gene Location: 70-504 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 295-496 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 295 -496 bp Feature: gene Location: 878-1228 bp Feature: domain Description: Peptidase_A17 Location: 881-1121 bp Feature: domain Description: Peptidase_A17 Location: 881-1121 bp Feature: gene Location: 1278-1778 bp Feature: domain Description: Integrase_H2C2 Location: 1368-1521 bp Feature: domain Description: Integrase_H2C2 Location: 1368-15 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, Peptidase_A17 (pfam05380), Integrase_H2C2 (pfam17921)

Seq: CACPSS010000123.1 (2983 bp)
Overview 1 RT 1: 11-2603 bp Neighborhood of RT #1 [11, 2980] RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 11-2980 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 827-1001 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 827-1001 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1355-1697 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1355-16 97 bp Feature: domain Description: Integrase_H2C2 Location: 2102-2246 bp Feature: domain Description: Integrase_H2C2 Location: 2102-2246 bp Feature: domain Description: rve Location: 2297-2603 bp Feature: domain Description: rve Location: 2297-26 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG13/RVT-UG23/RVT-DGRs/RVT-Retrons(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: CACPSS010000077.1 (5931 bp)
Overview 1 RT 1: 131-5930 bp Neighborhood of RT #1 [131, 5930] R1-I-EN RVT-GII Feature: gene Location: 131-2512 bp Feature: gene Location: 2505-5726 bp Feature: domain Description: R1-I-EN Location: 2532-3177 bp Feature: domain Description: R1-I-EN Location: 2532-317 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4245-4752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4245-47 52 bp Feature: gene Location: 5745-5930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R1-I-EN (cd09077), RVT-GII

Seq: CACPSS010000165.1 (1508 bp)
Overview 1 RT 1: 125-1235 bp Neighborhood of RT #1 [125, 1507] RVT_N RVT-GII GIIM Feature: gene Location: 125-1507 bp Feature: domain Description: RVT_N Location: 128-254 bp Feature: domain Description: RVT_N Location: 128 -254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-950 bp Feature: domain Description: GIIM Note: maturase Location: 1001-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1001-1235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)