myRT

myRT report for GCA_902636965.1_WOLB0061

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Seq: CACPSV010000180.1 (1770 bp)
Overview 1 RT 1: 52-1103 bp Neighborhood of RT #1 [52, 1210] RVT-UG26 Peptidase_A17 Feature: gene Location: 52-486 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 277-478 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 277-478 bp Feature: gene Location: 595-819 bp Feature: gene Location: 860-1210 bp Feature: domain Description: Peptidase_A17 Location: 863-1103 bp Feature: domain Description: Peptidase_A1 7 Location: 863-1 1 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, Peptidase_A17 (pfam05380)

Seq: CACPSV010000185.1 (1699 bp)
Overview 1 RT 1: 389-1697 bp Neighborhood of RT #1 [389, 1697] RT_RNaseH_2 RVT-DGRs Feature: gene Location: 389-526 bp Feature: gene Location: 657-878 bp Feature: domain Description: RT_RNaseH_2 Location: 708-876 bp Feature: domain Description: RT_RNaseH_2 Location: 708-876 bp Feature: gene Location: 932-1246 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 962-1172 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 962 -1172 bp Feature: gene Location: 1485-1697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_RNaseH_2 (pfam17919), RVT-DGRs

Seq: CACPSV010000161.1 (2068 bp)
Overview 1 RT 1: 219-1675 bp Neighborhood of RT #1 [219, 1947] RVT_N RVT-GII GIIM Feature: gene Location: 219-362 bp Feature: gene Location: 400-1947 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 9-13 90 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1675 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACPSV010000062.1 (7179 bp)
Overview 1 RT 1: 2-6728 bp Neighborhood of RT #1 [2, 6728] RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Gypsy Feature: gene Location: 2-1339 bp Feature: gene Location: 1549-4683 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2530-2704 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2530-2704 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3058-3400 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3058-34 00 bp Feature: domain Description: Integrase_H2C2 Location: 3805-3949 bp Feature: domain Description: Integrase_H2C2 Location: 3805-394 9 bp Feature: domain Description: rve Location: 4000-4306 bp Feature: domain Description: rve Location: 4 000-4 306 bp Feature: gene Location: 4743-6152 bp Feature: domain Description: Gypsy Location: 4758-6018 bp Feature: domain Description: Gypsy Location: 4 758-6018 bp Feature: gene Location: 6540-6728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG13/RVT-UG23/RVT-DGRs/RVT-Retrons(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), Gypsy (pfam07253)

Seq: CACPSV010000035.1 (10454 bp)
Overview 1 RT 1: 5714-9604 bp Neighborhood of RT #1 [5714, 9604] PDDEXK_2 RVT_N RVT-GII GIIM PDDEXK_2 Feature: gene Location: 5714-6157 bp Feature: domain Description: PDDEXK_2 Location: 5741-5960 bp Feature: domain Description: PDDEXK_2 Location: 5 741-5 960 bp Feature: gene Location: 6412-6555 bp Feature: gene Location: 6593-8140 bp Feature: domain Description: RVT_N Location: 6644-6887 bp Feature: domain Description: RVT_N Location: 6644-6887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6932-7583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6932-75 83 bp Feature: domain Description: GIIM Note: maturase Location: 7634-7868 bp Feature: domain Description: GIIM Note: maturase Location: 7634-7868 bp Feature: gene Location: 8137-8871 bp Feature: domain Description: PDDEXK_2 Location: 8263-8728 bp Feature: domain Description: PDDEXK_2 Location: 8263-8728 bp Feature: gene Location: 9068-9604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACPSV010000079.1 (5778 bp)
Overview 1 RT 1: 1-5682 bp Neighborhood of RT #1 [1, 5768] retropepsin_like Spuma_A9PTase RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Gypsy Feature: gene Location: 1-141 bp Feature: gene Location: 44-1003 bp Feature: gene Location: 1024-4107 bp Feature: domain Description: retropepsin_like Location: 1036-1312 bp Feature: domain Description: retropepsin_like Location: 1036 -1312 bp Feature: domain Description: Spuma_A9PTase Location: 1354-1615 bp Feature: domain Description: Spuma_A9PTase Location: 1354-16 15 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1999-2203 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1999-2203 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2494-2842 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2494-2842 bp Feature: domain Description: Integrase_H2C2 Location: 3262-3403 bp Feature: domain Description: Integrase_H2C2 Location: 326 2-3403 bp Feature: domain Description: rve Location: 3457-3760 bp Feature: domain Description: rve Location: 3457-376 0 bp Feature: gene Location: 4215-5768 bp Feature: domain Description: Gypsy Location: 4335-5682 bp Feature: domain Description: Gypsy Location: 4335-56 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), Spuma_A9PTase (pfam03539), RVT-DGRs/RVT-UG26/RVT-UG4/RVT-UNC(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), Gypsy (pfam07253)

Seq: CACPSV010000003.1 (25792 bp)
Overview 1 RT 1: 13888-19796 bp Neighborhood of RT #1 [13888, 20152] Virulence_RhuM RVT-GII PRK07078 repA Feature: gene Location: 13888-14892 bp Feature: domain Description: Virulence_RhuM Location: 14077-14827 bp Feature: domain Description: Virulence_RhuM Location: 1407 7 -14827 bp Feature: gene Location: 15104-15307 bp Feature: gene Location: 15478-16791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15733-16423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157 33-16423 bp Feature: gene Location: 16704-16976 bp Feature: gene Location: 17957-20152 bp Feature: domain Description: PRK07078 Location: 18020-18938 bp Feature: domain Description: PRK07 07 8 Location: 18020-18938 bp Feature: domain Description: repA Location: 19037-19796 bp Feature: domain Description: repA Location: 19037 -197 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Virulence_RhuM (pfam13310), RVT-GII, PRK07078 (hypothetical protein; Validated), repA