myRT

myRT report for GCA_902645035.1_WOLB0836

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Seq: CACQWJ010000004.1 (24365 bp)
Overview 1 RT 1: 17479-23387 bp Neighborhood of RT #1 [17479, 23743] Virulence_RhuM RVT-GII PRK07078 repA Feature: gene Location: 17479-18483 bp Feature: domain Description: Virulence_RhuM Location: 17668-18418 bp Feature: domain Description: Virulence_RhuM Location: 1 7668-1 841 8 bp Feature: gene Location: 18695-18898 bp Feature: gene Location: 19069-20382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19324-20014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9324-2001 4 bp Feature: gene Location: 20295-20567 bp Feature: gene Location: 21548-23743 bp Feature: domain Description: PRK07078 Location: 21611-22529 bp Feature: domain Description: PRK07078 Location: 21 61 1 -22529 bp Feature: domain Description: repA Location: 22628-23387 bp Feature: domain Description: repA Location: 22628-23387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Virulence_RhuM (pfam13310), RVT-GII, PRK07078 (hypothetical protein; Validated), repA

Seq: CACQWJ010000146.1 (2034 bp)
Overview 1 RT 1: 2-1744 bp Neighborhood of RT #1 [2, 2031] RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 2-409 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 29-152 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2 9-152 bp Feature: gene Location: 625-2031 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 628-847 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 62 8-847 bp Feature: domain Description: Integrase_H2C2 Location: 1243-1387 bp Feature: domain Description: Integrase_H2 C2 Location: 12 43-1387 bp Feature: domain Description: rve Location: 1435-1744 bp Feature: domain Description: rve Location: 1435-1744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-UG11/RVT-UG16/RVT-UG23(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: CACQWJ010000163.1 (1632 bp)
Overview 1 RT 1: 219-1630 bp Neighborhood of RT #1 [219, 1629] RVT_N RVT-GII GIIM Feature: gene Location: 219-362 bp Feature: gene Location: 400-1629 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 9-13 90 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1630 bp Feature: domain Description: GIIM Note: maturase Location: 1441-163 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACQWJ010000009.1 (16418 bp)
Overview 1 RT 1: 10218-14108 bp Neighborhood of RT #1 [10218, 14108] PDDEXK_2 RVT_N RVT-GII GIIM PDDEXK_2 Feature: gene Location: 10218-10661 bp Feature: domain Description: PDDEXK_2 Location: 10245-10464 bp Feature: domain Description: PDDEXK_2 Location: 1024 5-104 64 bp Feature: gene Location: 10916-11059 bp Feature: gene Location: 11097-12644 bp Feature: domain Description: RVT_N Location: 11148-11391 bp Feature: domain Description: RVT_N Location: 1114 8-11391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11436-12087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114 36-12087 bp Feature: domain Description: GIIM Note: maturase Location: 12138-12372 bp Feature: domain Description: GIIM Note: maturase Location: 12138-12372 bp Feature: gene Location: 12641-13375 bp Feature: domain Description: PDDEXK_2 Location: 12767-13232 bp Feature: domain Description: PDDEXK_2 Location: 12767-13232 bp Feature: gene Location: 13572-14108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)