myRT

myRT report for GCA_902645355.1_WOLB0868

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Seq: CACQYA010000160.1 (2068 bp)
Overview 1 RT 1: 219-1675 bp Neighborhood of RT #1 [219, 1947] RVT_N RVT-GII GIIM Feature: gene Location: 219-362 bp Feature: gene Location: 400-1947 bp Feature: domain Description: RVT_N Location: 451-688 bp Feature: domain Description: RVT_N Location: 451 -688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1 390 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1675 bp Feature: domain Description: GIIM Note: maturase Location: 1 441 -1 675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CACQYA010000003.1 (24365 bp)
Overview 1 RT 1: 17479-23387 bp Neighborhood of RT #1 [17479, 23743] Virulence_RhuM RVT-GII PRK07078 repA Feature: gene Location: 17479-18483 bp Feature: domain Description: Virulence_RhuM Location: 17668-18418 bp Feature: domain Description: Virulence_RhuM Location: 17668-18418 bp Feature: gene Location: 18695-18898 bp Feature: gene Location: 19069-20382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19324-20014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1932 4-2 0014 bp Feature: gene Location: 20295-20567 bp Feature: gene Location: 21548-23743 bp Feature: domain Description: PRK07078 Location: 21611-22529 bp Feature: domain Description: PRK07078 Location: 2 1611-2 2 52 9 bp Feature: domain Description: repA Location: 22628-23387 bp Feature: domain Description: repA Location: 2 2 62 8-2 3387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Virulence_RhuM (pfam13310), RVT-GII, PRK07078 (hypothetical protein; Validated), repA

Seq: CACQYA010000118.1 (3319 bp)
Overview 1 RT 1: 81-2782 bp Neighborhood of RT #1 [81, 2820] RVT-UNC Integrase_H2C2 rve Gypsy Feature: gene Location: 81-1283 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 144-267 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 144-267 bp Feature: domain Description: Integrase_H2C2 Location: 777-921 bp Feature: domain Description: Integrase_H2C2 Location: 777-921 bp Feature: domain Description: rve Location: 969-1278 bp Feature: domain Description: rve Location: 969-1278 bp Feature: gene Location: 1461-1655 bp Feature: gene Location: 1690-2820 bp Feature: domain Description: Gypsy Location: 1741-2782 bp Feature: domain Description: Gypsy Location: 1741-2782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3/RVT-UG20/RVT-UG26/RVT-CRISPR(RVT-UNC), Integrase_H2C2 (pfam17921), rve (pfam00665), Gypsy (pfam07253)

Seq: CACQYA010000009.1 (17720 bp)
Overview 1 RT 1: 3613-9794 bp Neighborhood of RT #1 [3613, 9799] PDDEXK_2 RVT_N RVT-GII GIIM PDDEXK_2 PRK10263 FtsK Feature: gene Location: 3613-4149 bp Feature: gene Location: 4346-5080 bp Feature: domain Description: PDDEXK_2 Location: 4472-4937 bp Feature: domain Description: PDDEXK_2 Location: 4 4 72-4 937 bp Feature: gene Location: 5077-6624 bp Feature: domain Description: RVT_N Location: 5128-5371 bp Feature: domain Description: RVT_N Location: 5128-5371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5416-6067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 16-6067 bp Feature: domain Description: GIIM Note: maturase Location: 6118-6352 bp Feature: domain Description: GIIM Note: maturase Location: 6118-6352 bp Feature: gene Location: 7060-7503 bp Feature: domain Description: PDDEXK_2 Location: 7087-7306 bp Feature: domain Description: PDDEXK_2 Location: 7087-7306 bp Feature: gene Location: 7685-9799 bp Feature: domain Description: PRK10263 Location: 7697-7901 bp Feature: domain Description: PRK10263 Location: 7697-7901 bp Feature: domain Description: FtsK Location: 8249-9794 bp Feature: domain Description: FtsK Location: 824 9-9794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK10263 (DNA translocase FtsK; Provisional), FtsK (COG1674)