myRT

myRT report for GCA_902646075.1_WOLB0075

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Seq: CACRBF010000361.1 (1042 bp)
Overview 1 RT 1: 2-880 bp Neighborhood of RT #1 [2, 1041] RVT-UG26 Peptidase_A17 Feature: gene Location: 2-229 bp Feature: gene Location: 355-1041 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 388-592 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 388-592 bp Feature: domain Description: Peptidase_A17 Location: 763-880 bp Feature: domain Description: Peptidase_A1 7 Location: 763-880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, Peptidase_A17 (pfam05380)

Seq: CACRBF010000137.1 (3026 bp)
Overview 1 RT 1: 3-2647 bp Neighborhood of RT #1 [3, 3024] Gypsy RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 3-494 bp Feature: domain Description: Gypsy Location: 54-471 bp Feature: domain Description: Gypsy Location: 54-471 bp Feature: gene Location: 520-3024 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 871-1045 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 871-1045 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1399-1741 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1399-1741 bp Feature: domain Description: Integrase_H2C2 Location: 2146-2290 bp Feature: domain Description: Integrase_H2 C2 Location: 2 146-2 2 90 bp Feature: domain Description: rve Location: 2341-2647 bp Feature: domain Description: rve Location: 2 341-2 647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gypsy (pfam07253), RVT-UG13/RVT-UG23/RVT-DGRs/RVT-Retrons(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: CACRBF010000205.1 (2077 bp)
Overview 1 RT 1: 1-1410 bp Neighborhood of RT #1 [1, 1517] RT_pepA17 RVT-UG26 Peptidase_A17 Feature: gene Location: 1-414 bp Feature: domain Description: RT_pepA17 Location: 310-379 bp Feature: domain Description: RT_pepA17 Location: 3 10-3 79 bp Feature: gene Location: 359-793 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 584-785 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 584-785 bp Feature: gene Location: 902-1126 bp Feature: gene Location: 1167-1517 bp Feature: domain Description: Peptidase_A17 Location: 1170-1410 bp Feature: domain Description: Peptidase_A17 Location: 1170-1410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_pepA17 (cd01644), RVT-UG26, Peptidase_A17 (pfam05380)

Seq: CACRBF010000159.1 (2594 bp)
Overview 1 RT 1: 1-1250 bp Neighborhood of RT #1 [1, 1250] RVT-GII Feature: gene Location: 1-276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31-217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31-217 bp Feature: gene Location: 352-765 bp Feature: gene Location: 834-1250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CACRBF010000189.1 (2209 bp)
Overview 1 RT 1: 2-1316 bp Neighborhood of RT #1 [2, 2206] RVT-GII Feature: gene Location: 2-2206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806-1316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806-1316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CACRBF010000264.1 (1574 bp)
Overview 1 RT 1: 48-1543 bp Neighborhood of RT #1 [48, 1572] RVT_N RVT-GII YkfC Feature: gene Location: 48-191 bp Feature: gene Location: 229-1572 bp Feature: domain Description: RVT_N Location: 280-523 bp Feature: domain Description: RVT_N Location: 280-523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56 8-1219 bp Feature: domain Description: YkfC Location: 1219-1543 bp Feature: domain Description: YkfC Location: 1219-1543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: CACRBF010000005.1 (13893 bp)
Overview 1 RT 1: 2451-8359 bp Neighborhood of RT #1 [2451, 8715] Virulence_RhuM RVT-GII PRK07078 repA Feature: gene Location: 2451-3455 bp Feature: domain Description: Virulence_RhuM Location: 2640-3390 bp Feature: domain Description: Virulence_RhuM Location: 2640-3390 bp Feature: gene Location: 3667-3870 bp Feature: gene Location: 4041-5354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4296-4986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4296-4986 bp Feature: gene Location: 5267-5539 bp Feature: gene Location: 6520-8715 bp Feature: domain Description: PRK07078 Location: 6583-7501 bp Feature: domain Description: PRK07 07 8 Location: 6583-7 501 bp Feature: domain Description: repA Location: 7600-8359 bp Feature: domain Description: repA Location: 7 600-8359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Virulence_RhuM (pfam13310), RVT-GII, PRK07078 (hypothetical protein; Validated), repA